[cctbxbb] Problems compiling cctbx on OS X (10.8.0)

[William G. Scott]

Hi Luc:

I don't know how to find the version of Boost, but everything else is here:

http://fennario.ucsc.edu/~wgscott/temp/everything.log

I've hidden all "third-party" stuff like /usr/local and /sw, so the only (unmodified) python is what comes with 10.8, the only compilers are those supplied with the latest Xcode, and so on.

This time I used the supplied cctbx_install_script.csh and put a -v in the shell invocation to provide verbose output.

I invoked this from zsh, from bash, and from tcsh.  Only the first of these has significant customizations, so I don't think it is my shell environment.

I can't think of anything else.  Since g++ works, I can't see how it could be anything other than clang.



Bill


William G. Scott
Professor
Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
228 Sinsheimer Laboratories
University of California at Santa Cruz
Santa Cruz, California 95064
USA



On Aug 2, 2012, at 5:26 AM, Luc Bourhis <luc_j_bourhis at mac.com> wrote:

> Hi William,
> 
>> I am having the same problem compiling cctbx stand-alone, or within CCP4.  I've posted the error log here:
>> 
>> http://fennario.ucsc.edu/~wgscott/temp/cctbx_compile_errors.log
> 
> From the information given in the discussion that followed, you have installed Xcode 4.4 command line tools. So do I but I can't reproduce the problem with the cctbx trunk as of a few minutes ago. From the error log you linked to, the compilation of mmtbx/bulk_solvent/bulk_solvent_ext.cpp fails. Could you copy me the exact compiler invocation? Moreover, although it should not matter considering the compiler errors at hand, could you tell me which version of Boost you used?
> 
> Finally, a general remark is in order: thou shall never try to work around such problems by playing with --compiler. Instead, please, loudly complain on this forum: the cctbx must compile with the latest Xcode tools and a build directory setup with simply "python configure.py mmtbx".
> 
> Best wishes,
> 
> Luc
> 
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