[cctbxbb] Build failing

Graeme.Winter at diamond.ac.uk Graeme.Winter at diamond.ac.uk
Mon Oct 1 00:24:13 PDT 2012


Hi Nat,

I don't know but I will check - there is a good chance that this is to blame.

The build worked fine with the compilers etc. until just now - 

build tag for boost is 73458, I will try a new version.

Best wishes,

Graeme


-----Original Message-----
From: cctbxbb-bounces at phenix-online.org [mailto:cctbxbb-bounces at phenix-online.org] On Behalf Of Nathaniel Echols
Sent: 28 September 2012 14:21
To: cctbx mailing list
Subject: Re: [cctbxbb] Build failing

How old are your boost sources?  These aren't part of the SVN tree (we distribute a snapshot of the boost SVN), so they won't be updated unless you get a new bundle.  (I can just give you the current Boost we're using if you want, which is now the release branch.)

-Nat

On Fri, Sep 28, 2012 at 3:51 AM,  <Graeme.Winter at diamond.ac.uk> wrote:
> Hi Folks,
>
> Following an svn update and several attempts to build, I am still 
> getting this compile error
>
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/det
> ail/bessel_jy.hpp:346:11: error: 'bessel_y_small_z_series' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jn.hpp:17:0,
>                  from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:18,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/det
> ail/bessel_jy_series.hpp:139:10: note: 'template<class T, class Policy> T boost::math::detail::bessel_y_small_z_series(T, T, T*, const Policy&)' declared here, later in the translation unit In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17:0,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/det
> ail/bessel_jy.hpp:356:11: error: 'bessel_j_small_z_series' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jn.hpp:17:0,
>                  from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:18,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/det
> ail/bessel_jy_series.hpp:47:10: note: 'template<class T, class Policy> T boost::math::detail::bessel_j_small_z_series(T, T, const Policy&)' declared here, later in the translation unit In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17:0,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/det
> ail/bessel_jy.hpp:363:11: error: 'bessel_yn_small_z' was not declared in this scope, and no declarations were found by argument-dependent lookup at the point of instantiation [-fpermissive] In file included from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jn.hpp:17:0,
>                  from /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:18,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9,
>                  from /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/det
> ail/bessel_jy_series.hpp:213:3: note: 'template<class T, class Policy> 
> T boost::math::detail::bessel_yn_small_z(int, T, T*, const Policy&)' 
> declared here, later in the translation unit
> scons: *** [scitbx/math/boost_python/math_ext.o] Error 1
> scons: building terminated because of errors.
> usr+sys time: 26.64 seconds, ticks: 51849408, micro-seconds/tick: 
> usr+0.514
> wall clock time: 8 minutes 5.55 seconds (485.55 seconds total)
> make: *** [default] Error 2
>
> OS X Lion machine
>
> Graemes-MacBook-Pro:build graeme$ uname -a Darwin 
> Graemes-MacBook-Pro.local 11.4.0 Darwin Kernel Version 11.4.0: Mon Apr  
> 9 19:32:15 PDT 2012; root:xnu-1699.26.8~1/RELEASE_X86_64 x86_64 
> Graemes-MacBook-Pro:build graeme$ gcc --version gcc (GCC) 4.7.0 
> 20120314 (prerelease) Copyright (C) 2012 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There 
> is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
>
> Have I missed something? Nightly builds seem to be OK.
>
> Commands
>
> ../../cctbx_plus/base/Python.framework/Versions/2.7/Resources/Python.a
> pp/Contents/MacOS/Python ../sources/cctbx_project/libtbx/configure.py 
> --compiler=gcc labelit cctbx bpcx_regression rstbx  . setpaths.sh  
> make
>
> Thanks,
>
> Graeme
>
>
>
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