[cctbxbb] Boost Import Error

[Magnus Andersson]

yes, that's empty too. Do you have an idea of how to best proceed?

@@@@@@ '' @@@@@@
@@@@@@ '' @@@@@@
Traceback (most recent call last):
  File "PyWAXS.py", line 11, in <module>
    import iotbx.pdb
  File "/Users/magnus/Downloads/cctbx_sources/iotbx/pdb/__init__.py", line 2, in <module>
    from cctbx.array_family import flex
  File "/Users/magnus/Downloads/cctbx_sources/cctbx/array_family/flex.py", line 2, in <module>
    import scitbx.array_family.flex
  File "/Users/magnus/Downloads/cctbx_sources/scitbx/array_family/flex.py", line 2, in <module>
    import boost.optional # import dependency
  File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/optional.py", line 2, in <module>
    import boost.python
  File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/python.py", line 129, in <module>
    floating_point_exceptions = floating_point_exceptions()
  File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/python.py", line 122, in floating_point_exceptions
    import libtbx.load_env
  File "/Users/magnus/Downloads/cctbx_sources/libtbx/load_env.py", line 5, in <module>
    libtbx.env = libtbx.env_config.unpickle()
  File "/Users/magnus/Downloads/cctbx_sources/libtbx/env_config.py", line 2196, in unpickle
    set_preferred_sys_prefix_and_sys_executable(build_path=build_path)
  File "/Users/magnus/Downloads/cctbx_sources/libtbx/env_config.py", line 2111, in set_preferred_sys_prefix_and_sys_executable
    if (op.samefile(build_path, dirname)):
  File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/posixpath.py", line 162, in samefile
    s1 = os.stat(f1)
OSError: [Errno 2] No such file or directory: ''

On 04 Jun 2014, at 16:47, Magnus Andersson <magnus.andersson at scilifelab.se> wrote:

> I get:
> 
> @@@@@@ '' @@@@@@
> Traceback (most recent call last):
>   File "PyWAXS.py", line 11, in <module>
>     import iotbx.pdb
>   File "/Users/magnus/Downloads/cctbx_sources/iotbx/pdb/__init__.py", line 2, in <module>
>     from cctbx.array_family import flex
>   File "/Users/magnus/Downloads/cctbx_sources/cctbx/array_family/flex.py", line 2, in <module>
>     import scitbx.array_family.flex
>   File "/Users/magnus/Downloads/cctbx_sources/scitbx/array_family/flex.py", line 2, in <module>
>     import boost.optional # import dependency
>   File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/optional.py", line 2, in <module>
>     import boost.python
>   File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/python.py", line 129, in <module>
>     floating_point_exceptions = floating_point_exceptions()
>   File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/python.py", line 122, in floating_point_exceptions
>     import libtbx.load_env
>   File "/Users/magnus/Downloads/cctbx_sources/libtbx/load_env.py", line 5, in <module>
>     libtbx.env = libtbx.env_config.unpickle()
>   File "/Users/magnus/Downloads/cctbx_sources/libtbx/env_config.py", line 2195, in unpickle
>     set_preferred_sys_prefix_and_sys_executable(build_path=build_path)
>   File "/Users/magnus/Downloads/cctbx_sources/libtbx/env_config.py", line 2111, in set_preferred_sys_prefix_and_sys_executable
>     if (op.samefile(build_path, dirname)):
>   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/posixpath.py", line 162, in samefile
>     s1 = os.stat(f1)
> OSError: [Errno 2] No such file or directory: ''
> 
> i.e. looks empty, or?
> 
> Magnus
> 
> On 04 Jun 2014, at 16:38, Luc Bourhis <luc_j_bourhis at mac.com> wrote:
> 
>>> I'm afraid I'm not sure what you mean? The directory /Users/magnus/Downloads/cctbx_build does exist. 
>> 
>> I am at a loss here, and I worked on some of that code! Could you add the following line
>> 
>> print "@@@@@@ %r @@@@@@" % build_path
>> 
>> as the first line of the function set_preferred_sys_prefix_and_sys_executable in libtbx/env_config.py, please?
>> 
>> Luc
>> 
>> 
>> _______________________________________________
>> cctbxbb mailing list
>> cctbxbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/cctbxbb
> 

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