[cctbxbb] Mac builds currently broken on Jenkins

Wed Jan 27 11:33:23 PST 2016

Hi Markus, I can't reproduce the error on my mac laptop.

Here's what I did, in an empty directory with a clean shell:
python bootstrap.py --builder=cctbx
python bootstrap.py --builder=dials

I did cctbx first to see if the error was dials independent, but neither
commands had the problem.

Further, the mac builds on Buildbot are all compiling fine.

What system is showing the error on your end?

-Aaron

On Wed, Jan 27, 2016 at 9:13 AM, <markus.gerstel at diamond.ac.uk> wrote:

> Hello everyone,
>
>
>
> Just a reminder that the MacOSX builds are currently still broken due to
> an apparently missing msvc.hpp in the boost directory for the *build*
> step.
>
>
>
> -Markus
>
>
>
> *From:* cctbxbb-bounces at phenix-online.org [mailto:
> cctbxbb-bounces at phenix-online.org] *On Behalf Of *
> markus.gerstel at diamond.ac.uk
> *Sent:* 22 January 2016 08:53
> *To:* cctbxbb at phenix-online.org
> *Subject:* [cctbxbb] FW: Mac builds currently broken on Jenkins
>
>
>
> Sorry, this should have gone onto cctbx list.
>
> This is running *bootstrap.py --builder=dials build* on MacOS X, but I
> don’t think it is specific to dials.
>
>
>
> -Markus
>
>
>
> *From:* Gerstel, Markus (DLSLtd,RAL,LSCI)
> *Sent:* 22 January 2016 08:51
> *To:* dials-support at lists.sourceforge.net
> *Subject:* Mac builds currently broken on Jenkins
>
>
>
> During the build step this happens:
>
>
>
>
>
> (..)
>
> /usr/bin/c++ -o annlib_adaptbx/self_include/bd_fix_rad_search.o -c
> -DBOOST_ALL_NO_LIB -fPIC -fno-strict-aliasing -Wno-c++0x-extensions
> -Wno-array-bounds -DNDEBUG -O3 -ffast-math
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/src
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/annlib_adaptbx/include
> annlib_adaptbx/self_include/bd_fix_rad_search.cpp
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/ann/ann_adaptor.cpp:3:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include/annlib_adaptbx/ann_adaptor.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/flex_types.h:5:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/accessors/flex_grid.h:5:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small_plain.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny_plain.h:5:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/detail/misc.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/type_traits.h:29:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits.hpp:13:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/add_const.hpp:16:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/type_trait_def.hpp:14:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/template_arity_spec.hpp:10:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int.hpp:17:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int_fwd.hpp:17:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/adl_barrier.hpp:17:
>
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/config/adl.hpp:17:10:
> fatal error: 'boost/mpl/aux_/config/msvc.hpp' file not found
>
> #include <boost/mpl/aux_/config/msvc.hpp>
>
>          ^
>
> /usr/bin/c++ -o annlib_adaptbx/self_include/bd_pr_search.o -c
> -DBOOST_ALL_NO_LIB -fPIC -fno-strict-aliasing -Wno-c++0x-extensions
> -Wno-array-bounds -DNDEBUG -O3 -ffast-math
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/src
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/annlib_adaptbx/include
> annlib_adaptbx/self_include/bd_pr_search.cpp
>
> /usr/bin/c++ -o annlib_adaptbx/self_include/bd_search.o -c
> -DBOOST_ALL_NO_LIB -fPIC -fno-strict-aliasing -Wno-c++0x-extensions
> -Wno-array-bounds -DNDEBUG -O3 -ffast-math
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/src
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include
> -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/annlib_adaptbx/include
> annlib_adaptbx/self_include/bd_search.cpp
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/ann/boost_python/annlib_ext.cpp:2:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include/annlib_adaptbx/ann_adaptor.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/flex_types.h:5:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/accessors/flex_grid.h:5:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small_plain.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny_plain.h:5:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/detail/misc.h:4:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/type_traits.h:29:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits.hpp:13:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/add_const.hpp:16:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/type_trait_def.hpp:14:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/template_arity_spec.hpp:10:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int.hpp:17:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int_fwd.hpp:17:
>
> In file included from
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/adl_barrier.hpp:17:
>
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/config/adl.hpp:17:10:
> fatal error: 'boost/mpl/aux_/config/msvc.hpp' file not found
>
> #include <boost/mpl/aux_/config/msvc.hpp>
>
>          ^
>
> 1 error generated.
>
> scons: *** [annlib_adaptbx/ann/ann_adaptor.o] Error 1
>
> 1 error generated.
>
> scons: *** [annlib_adaptbx/ann/boost_python/annlib_ext.o] Error 1
>
> scons: building terminated because of errors.
>
> usr+sys time: 3.36 seconds, ticks: 13399823, micro-seconds/tick: 0.251
>
> wall clock time: 15.72 seconds
>
> Performing actions: build
>
> ===== Running in .: deleting dist, tests, tmp
>
>
>
>   removing .pyc files in
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules
>
>   removed 3 files
>
> ===== Running in build: run configure.py
>
> ===== Running in build: save configure command
>
> ===== Running in build: libtbx.scons
>
> Process failed with return code 2
>
> Build step 'Execute shell' marked build as failure
>
>
>
>
>
> -Markus
>
>
>
>
>
> --
>
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> use, copy, retain, distribute or disclose the information in or attached to
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> Any opinions expressed within this e-mail are those of the individual and
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> Diamond Light Source Ltd. cannot guarantee that this e-mail or any
> attachments are free from viruses and we cannot accept liability for any
> damage which you may sustain as a result of software viruses which may be
> transmitted in or with the message.
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> and Wales with its registered office at Diamond House, Harwell Science and
> Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
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