[cctbxbb] rpath problem on Mac system

[Billy Poon]

Hey Haiguang,

There is a relatively new way of getting cctbx and its dependencies. Just
run

svn export svn://
svn.code.sf.net/p/cctbx/code/trunk/libtbx/auto_build/bootstrap.py
python bootstrap.py --builder=cctbx

The bootstrap.py file will download all the sources anonymously. If you
want, you can provide your cci username and sourceforge username with the
--cciuser and --sfuser flags to bootstrap.py, respectively. I don't think
sastbx is supported, though. If you do provide the usernames, just make
sure to have an ssh agent running with the appropriate key.


--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org

On Tue, Sep 20, 2016 at 4:37 PM, Haiguang Liu <haiguang.liu at gmail.com>
wrote:

> Dear Graeme, and Billy
>
> Thanks for the quick reply.
>
> This is not from the standard cctbx or phenix source installation.
>
> It is based on an older version (the code might be dated back to 2013),
> from which Peter and I wrote some program for saxs analysis. I have not
> updated the cctbx source tree since then. That's why I was asking whether
> someone encountered this. After reading the mail list, I found there is one
> thread saying about AUTO_BUILD, where a rpath.py is available.
>
> I can try to update the cctbx source (but the code is not available online
> any more?) Do you know where to download the new version cctbx source?
>
> Thanks,
> Haiguang
>
> On Tue, Sep 20, 2016 at 7:49 PM, <Graeme.Winter at diamond.ac.uk> wrote:
>
>> Dear Haiguang,
>>
>>
>>
>> I for one have been using OS X El Capitan for a good long while now with
>> no problems…
>>
>>
>>
>> Please could you give more information as to what the exact problem is?
>> I.e. where you are trying to install and so on.
>>
>>
>>
>> Thanks & best wishes Graeme
>>
>>
>>
>> *From:* cctbxbb-bounces at phenix-online.org [mailto:cctbxbb-bounces at phenix
>> -online.org] *On Behalf Of *Haiguang Liu
>> *Sent:* 20 September 2016 12:47
>> *To:* cctbxbb at phenix-online.org
>> *Subject:* [cctbxbb] rpath problem on Mac system
>>
>>
>>
>> Dear CCTBX developing team,
>>
>>
>>
>> Is there already a solution for the run path problem in the new Mac OS?
>>
>>
>>
>> The  System Integrity Protection
>> <https://support.apple.com/en-us/HT204899> does not allow relative run
>> path. I temporarily disabled this feature to run the programs that requires
>> boost (for example).
>>
>>
>>
>> If there is already a solution, please let me know.
>>
>>
>>
>> Thanks,
>>
>> Haiguang
>>
>>
>>
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