[cctbxbb] rna3p error

Pavel Afonine pafonine at lbl.gov
Wed Aug 30 08:35:15 PDT 2017


Hi Haiguang,

please send us PDB file and we will investigate.

Thanks,
Pavel

On 8/30/17 07:23, Haiguang Liu wrote:
> Dear All,
>
> I recently run into an error while processing DNA molecules using 
> pdb_interpreter. The error message is as the following:
>
>  File 
> "/Users/hgliu/test/cctbx/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", 
> line 5419, in __init__
>     restraints_loading_flags=restraints_loading_flags)
>   File 
> "/Users/hgliu/test/cctbx/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", 
> line 3221, in __init__
>     log=log,
>   File 
> "/Users/hgliu/test/cctbx/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", 
> line 2507, in __init__
>     m_j=mm,
>   File 
> "/Users/hgliu/test/cctbx/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", 
> line 1693, in get_lib_link
>     return mon_lib_srv.link_link_id_dict["rna3p"]
> KeyError: 'rna3p'
>
> After searching through the threads, I found the same error has been 
> reported, but no solution posted. Any suggestion is appreciated.
>
> Best,
> haiguang
>
>
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> cctbxbb at phenix-online.org
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