[cctbxbb] Fwd: [Dials-support] dials.stills_process crash report

Graeme.Winter at diamond.ac.uk Graeme.Winter at diamond.ac.uk
Wed Dec 13 01:34:37 PST 2017


Folks

Once again, lack of stack traces in easy_mp is a big annoyance

I forget the reasons why printing the actual error was a bad thing, but I do remember a discussion some 18 mo past

Not wishing to replay the entire transaction, but could we revisit this?

Thanks Graeme

Begin forwarded message:

From: <Danny.Axford at Diamond.ac.uk<mailto:Danny.Axford at Diamond.ac.uk>>
Subject: [Dials-support] dials.stills_process crash report
Date: 12 December 2017 at 17:43:41 GMT
To: <dials-support at lists.sourceforge.net<mailto:dials-support at lists.sourceforge.net>>
Cc: martin.appleby at diamond.ac.uk<mailto:martin.appleby at diamond.ac.uk>

Perhaps this means something to someone. This is the SACLA data again, it seems to run happily and then hit a problematic frame? Martin and I see the error at pretty much the same point in the dataset, we were both running on local machines rather than the cluster.

Cheers,
Danny



Detector 1 RMSDs by panel:
----------------------------------------------------
| Panel | Nref | RMSD_X  | RMSD_Y  | RMSD_DeltaPsi |
| id    |      | (px)    | (px)    | (deg)         |
----------------------------------------------------
| 1     | 89   | 0.37442 | 0.48949 | 0.2192        |
| 2     | 69   | 0.49627 | 0.4847  | 0.21385       |
| 5     | 90   | 0.48267 | 0.59909 | 0.22839       |
| 6     | 70   | 0.6094  | 0.55592 | 0.20944       |
----------------------------------------------------
Traceback (most recent call last):
 File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev20171212/build/../modules/dials/command_line/stills_process.py", line 870, in <module>
   halraiser(e)
 File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev20171212/build/../modules/dials/command_line/stills_process.py", line 868, in <module>
   script.run()
 File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev20171212/build/../modules/dials/command_line/stills_process.py", line 383, in run
   preserve_exception_message=True)
 File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev20171212/modules/cctbx_project/libtbx/easy_mp.py", line 623, in parallel_map
   result = res()
 File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev20171212/modules/cctbx_project/libtbx/scheduling/result.py", line 119, in __call__
   self.traceback( exception = self.exception() )
 File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev20171212/modules/cctbx_project/libtbx/scheduling/stacktrace.py", line 86, in __call__
   raise exception
RuntimeError: Please report this error to dials-support at lists.sourceforge.net<mailto:dials-support at lists.sourceforge.net>: exit code = -9


--
This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.
Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd.
Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom


------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org<http://slashdot.org/>! http://sdm.link/slashdot
_______________________________________________
DIALS-support mailing list
DIALS-support at lists.sourceforge.net<mailto:DIALS-support at lists.sourceforge.net>
https://lists.sourceforge.net/lists/listinfo/dials-support




More information about the cctbxbb mailing list