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<div>Hi Nick,</div>
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<div>Thanks for your help … but unfortunately the problem remains … </div>
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<div>Any other idea ?</div>
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<div>Best regards</div>
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<div>Eike</div>
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<span style="font-weight:bold">From: </span><<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@phenix-online.org</a>> on behalf of Nicholas Sauter <<a href="mailto:nksauter@lbl.gov">nksauter@lbl.gov</a>><br>
<span style="font-weight:bold">Reply-To: </span>cctbx mailing list <<a href="mailto:cctbxbb@phenix-online.org">cctbxbb@phenix-online.org</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday 5 April 2016 18:23<br>
<span style="font-weight:bold">To: </span>cctbx mailing list <<a href="mailto:cctbxbb@phenix-online.org">cctbxbb@phenix-online.org</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [cctbxbb] CCTBX.XFEL problems with synchrotron stills<br>
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<div dir="ltr">Eike,
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<div>Possibly issuing the command </div>
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<div>libtbx.configure xfel</div>
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<div>followed by changing to the build directory and </div>
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<div>make</div>
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<div>would help sort this out.</div>
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<div>Nick</div>
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<div>Nicholas K. Sauter, Ph. D.<br>
Computer Staff Scientist, Molecular Biophysics and Integrated Bioimaging Division
<div>Lawrence Berkeley National Laboratory<br>
1 Cyclotron Rd., Bldg. 33R0345<br>
Berkeley, CA 94720<br>
(510) 486-5713<br>
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<div class="gmail_quote">On Tue, Apr 5, 2016 at 1:55 AM, Schulz, Eike-Christian <span dir="ltr">
<<a href="mailto:eike.schulz@mpsd.mpg.de" target="_blank">eike.schulz@mpsd.mpg.de</a>></span> wrote:<br>
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Dear all,<br>
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I am new to serial crystallography and trying to process still images from a synchrotron source (Pilatus 6M detector) using CCTBX. Obviously the process is not glitch-free and I was hoping to get some help here.<br>
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The indexing routine starts, indexes the images correctly and and produces a log file but no .pickle files are created in the results/000/ directory as described in the wiki entry.<br>
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I assume that there is a software module that is not properly loaded during the process since I get following error message during indexing:<br>
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---------BEGIN Integrate one frame 75 warsaw0048_00075.pickle<br>
EFFECTIVE TILING 0 0 2282 2282<br>
Indexing error: No module named cxi_user<br>
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Is there a way to find out if all dependencies are matched ? I suppose CCTBX.XFEL depends on some (specific) python libraries … ?<br>
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Or am I completely wrong and the error is something different ?<br>
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With best regards<br>
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Eike<br>
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