<div dir="ltr">Hi Haiguang,<div><br></div><div>Is it related to the DYLD_LIBRARY_PATH environment variable? We had an issue with Phenix and Rosetta on 10.11. I changed the fully_buffered class and call function in libtbx/easy_run.py to bypass SIP for OS X. Maybe there are more places that need the fix or maybe more environment variables need to be passed?</div><div><br></div><div>Also, the new macOS 10.12 seems to use randomized installation paths for unsigned applications. I think our command-line installer will be fine, but I'm not sure about the graphical installer that puts things in /Applications. </div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Tue, Sep 20, 2016 at 4:49 AM, <span dir="ltr"><<a href="mailto:Graeme.Winter@diamond.ac.uk" target="_blank">Graeme.Winter@diamond.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Dear Haiguang,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">I for one have been using OS X El Capitan for a good long while now with no problems…<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Please could you give more information as to what the exact problem is? I.e. where you are trying to install and so on.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Thanks & best wishes Graeme<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> <a href="mailto:cctbxbb-bounces@phenix-online.org" target="_blank">cctbxbb-bounces@phenix-online.<wbr>org</a> [mailto:<a href="mailto:cctbxbb-bounces@phenix-online.org" target="_blank">cctbxbb-bounces@<wbr>phenix-online.org</a>]
<b>On Behalf Of </b>Haiguang Liu<br>
<b>Sent:</b> 20 September 2016 12:47<br>
<b>To:</b> <a href="mailto:cctbxbb@phenix-online.org" target="_blank">cctbxbb@phenix-online.org</a><br>
<b>Subject:</b> [cctbxbb] rpath problem on Mac system<u></u><u></u></span></p><div><div class="h5">
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<p class="MsoNormal">Dear CCTBX developing team,<u></u><u></u></p>
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<p class="MsoNormal">Is there already a solution for the run path problem in the new Mac OS?<u></u><u></u></p>
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<p class="MsoNormal">The <span style="font-size:11.5pt;font-family:"Arial","sans-serif";color:#242729"> </span><a href="https://support.apple.com/en-us/HT204899" target="_blank"><span style="font-size:11.5pt;font-family:"Arial","sans-serif";color:#0e4c99;border:none windowtext 1.0pt;padding:0cm;text-decoration:none">System
Integrity Protection</span></a><span style="font-size:11.5pt;font-family:"Arial","sans-serif";color:#242729"> does not allow relative run path. I temporarily disabled this feature to run the programs that requires boost (for example).</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-size:11.5pt;font-family:"Arial","sans-serif";color:#242729">If there is already a solution, please let me know.</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-size:11.5pt;font-family:"Arial","sans-serif";color:#242729">Thanks,</span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-size:11.5pt;font-family:"Arial","sans-serif";color:#242729">Haiguang</span><u></u><u></u></p>
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