<div dir="ltr"><div dir="ltr">Hi Wolfram<div><br></div><div>Sorry, step 3 should be,</div><div><br></div><div>3) python modules/cctbx_project/libtbx/auto_build/bootstrap.py base --use-conda</div><div><br></div><div>You do not need the --builder argument.</div><div><br clear="all"><div><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 23, 2019 at 6:21 PM Billy Poon <<a href="mailto:BKPoon@lbl.gov">BKPoon@lbl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr">Hi Wolfram,<div><br></div><div>Sorry for the issue, are you using a recent build of CCTBX? Can you try these steps?</div><div><br></div><div>1) cd <CCTBX directory></div><div><div>2) rm -fr conda_base</div><div>3) python modules/cctbx_project/libtbx/auto_build/bootstrap.py base --builder=phenix --use-conda</div></div><div><br></div><div>It basically recreates the dependencies directory. It's using conda, so it should take less than 5 minutes. If you are using conda, you will need conda version 4.4 or greater.</div><div><br></div><div>Let me know if that doesn't solve the problem. Thanks!</div><div><br clear="all"><div><div dir="ltr" class="gmail-m_5677379434174893452gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div><br></div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, Aug 23, 2019 at 12:55 PM wtempel <<a href="mailto:wtempel@gmail.com" target="_blank">wtempel@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi,<div>Currently, cctbx.python behaves like described in this stackoverflow post:</div><div><a href="https://stackoverflow.com/questions/893053/seeing-escape-characters-when-pressing-the-arrow-keys-in-python-shell" target="_blank">https://stackoverflow.com/questions/893053/seeing-escape-characters-when-pressing-the-arrow-keys-in-python-shell</a>. I am missing the convenience of backspace delete, which is available on /usr/bin/python interactive sessions. Could that feature be added during compilation of the pre-built cctbx distributions?</div><div>Regards.</div><div>Wolfram Tempel</div></div>
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