[phenixbb] chain definition in phenix
Kornelius Zeth
kornelius.zeth at tuebingen.mpg.de
Tue Dec 18 11:26:57 PST 2007
Hi Tom,
this doesn't help. The last 12 chains are simply thrown out in the editing step.
Best wishes and thank!
Kornelius
On Tue, 18 Dec 2007 10:15:00 -0700
Tom Terwilliger <terwilliger at lanl.gov> wrote:
> Hi Kornelius,
>
> I am checking this out...but for the moment here is a solution:
>
> You can use 2-character chain codes in phenix. They go in the usual
> column for chain ID and the column just before it.
>
> So columns 21-22 in your PDB file could be:
> " A" (chain A, usual syntax)
> " B"
> " C" ...etc
> " 0"
> " 1"
> " 9"
> "AA" (chain AA, recognized only by hybrid-36 compatible programs)
> "AB"
> "AC" ...etc
>
> -Tom T
>
> At 06:34 AM 12/18/2007, you wrote:
> >Dear all,
> >
> >I'm trying to refine/rebuild a structure of 48 identical chains. In
> >Refmac the small letters a, b, c and 0 1 2 for the chains work quite
> >well and are distinguished. However that does not apply to Phenix
> >which sees A equal to a. What might be the solution to use?
> >
> >Thanks and best wishes
> >
> >Kornelius
> >
> > ----------------------------------------------
> > Kornelius Zeth
> > Max Planck Institute for Developmental Biology
> > Dept. Protein Evolution
> > Spemannstr. 35
> > 72076 Tuebingen, Germany
> > kornelius.zeth at tuebingen.mpg.de
> > Tel -49 7071 601 323
> > Fax -49 7071 601 349
> >_______________________________________________
> >phenixbb mailing list
> >phenixbb at phenix-online.org
> >http://www.phenix-online.org/mailman/listinfo/phenixbb
>
>
>
>
> Thomas C. Terwilliger
> Mail Stop M888
> Los Alamos National Laboratory
> Los Alamos, NM 87545
>
> Tel: 505-667-0072 email: terwilliger at LANL.gov
> Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
> PHENIX web site: http:www.phenix-online.org
> ISFI Integrated Center for Structure and Function Innovation web
> site: http://techcenter.mbi.ucla.edu
> TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
>
>
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----------------------------------------------
Kornelius Zeth
Max Planck Institute for Developmental Biology
Dept. Protein Evolution
Spemannstr. 35
72076 Tuebingen, Germany
kornelius.zeth at tuebingen.mpg.de
Tel -49 7071 601 323
Fax -49 7071 601 349
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