[phenixbb] coordination of metal ions
Petrus H Zwart
PHZwart at lbl.gov
Thu Mar 29 09:20:36 PDT 2007
I guess you can define a custom angle by introducing added distance restraint.
----- Original Message -----
From: Jesper Lykkegaard Karlsen <jelka at bioxray.dk>
Date: Thursday, March 29, 2007 7:25 am
Subject: [phenixbb] coordination of metal ions
To: PHENIX user mailing list <phenixbb at phenix-online.org>
> Dear Phenix-devels
>
> Is it possible set up geometric restrains for metal ions bound to
> protein in phenix.refine?
> elbow.builder seems only to work on separate molecules and not on
> metal
> ions with its coordinating sidechains.
> I found the feature to introduce custom bond distance between two
> atoms,
> but what about custom angles?
> And by the way will this these custom setting ignore Van Der Waals
> radii? or is there a way to set these for special atoms?
>
> Thanks!
>
> Jesper
>
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