PAfonine at lbl.gov
Wed Aug 20 16:22:39 PDT 2008
the message tells there are 707 bonds with the length more than the
cutoff. The cutoff is actually a big number - a unit cell period. So, I
presume there must be something very weird with your PDB file. If you
want me to debug it - please send me the file and I will look into this
problem right away.
On 8/20/2008 1:59 PM, Jianghai Zhu wrote:
> I am trying to use phenix.pdbtools to calculate the geometry
> statistics for a model from Rosetta. "phenix.pdbtools --show-geometry-
> statistics foo.pdb" stopped with a message "Sorry: Number of bonds
> with excessive lengths: 707". Anybody know what happened there?
> -- Jianghai
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> phenixbb at phenix-online.org
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