[phenixbb] xtriage crash - what to do?

Martin Moche Martin.Moche at ki.se
Mon Jun 9 09:40:51 PDT 2008


Dear Phenix developers,

I got a crash when running phenix xtriage on a mtz-file in P3112.  Error
message below:
The logfile prior to the crash is attached. 

Best regards,

Martin

############# Error message ################

Traceback (most recent call last):
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/command_line/xtriage.py",
line 7, in <module>
    xtriage.run(args=sys.argv[1:])
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/xtriage.py",
line 725, in run
    plot_out    = string_buffer )
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/xtriage.py",
line 383, in __init__
   
additional_parameters=self.params.scaling.input.parameters.misc_twin_parameters)
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
line 2380, in __init__
    out=out, verbose=verbose)
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
line 425, in __init__
    self.show(out)
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
line 596, in show
    self.suggest_new_space_groups(out=out)
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
line 450, in suggest_new_space_groups
    tmp_space_group = sgtbx.space_group_info( str(tmp_space_group),
space_group_t_den=t_den)
  File
"/net/fileserver/xtal/phenix-1.3b-rc4/cctbx/cctbx/sgtbx/__init__.py",
line 61, in __init__
    space_group_symbols=symbols, t_den=space_group_t_den)
RuntimeError: cctbx Internal Error:
/net/longnose/scratch1/phenix/phenix-1.3b-rc4/cctbx/sgtbx/change_of_basis_op.cpp(70):
CCTBX_ASSERT(c_.t().den() % s.t().den() == 0) failure.

__________________________________________________

Martin Moche, Ph.D., M.Sc.
Senior scientist
Karolinska Institutet
MBB/SGC
Scheeles väg 2
171 77 Stockholm
Sweden
Phone: +46-8-524 868 43
Mob:   +46-733-229327
Fax:   +46-8-524 868 68
Martin.Moche at ki.se


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