[phenixbb] xtriage crash - what to do?

[Peter Zwart]

Is it possible to send me the mzt / scalepack file?

P


2008/6/9 Martin Moche <Martin.Moche at ki.se>:
> Dear Phenix developers,
>
> I got a crash when running phenix xtriage on a mtz-file in P3112.  Error
> message below:
> The logfile prior to the crash is attached.
>
> Best regards,
>
> Martin
>
> ############# Error message ################
>
> Traceback (most recent call last):
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/command_line/xtriage.py",
> line 7, in <module>
>    xtriage.run(args=sys.argv[1:])
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/xtriage.py",
> line 725, in run
>    plot_out    = string_buffer )
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/xtriage.py",
> line 383, in __init__
>
> additional_parameters=self.params.scaling.input.parameters.misc_twin_parameters)
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
> line 2380, in __init__
>    out=out, verbose=verbose)
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
> line 425, in __init__
>    self.show(out)
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
> line 596, in show
>    self.suggest_new_space_groups(out=out)
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/mmtbx/mmtbx/scaling/twin_analyses.py",
> line 450, in suggest_new_space_groups
>    tmp_space_group = sgtbx.space_group_info( str(tmp_space_group),
> space_group_t_den=t_den)
>  File
> "/net/fileserver/xtal/phenix-1.3b-rc4/cctbx/cctbx/sgtbx/__init__.py",
> line 61, in __init__
>    space_group_symbols=symbols, t_den=space_group_t_den)
> RuntimeError: cctbx Internal Error:
> /net/longnose/scratch1/phenix/phenix-1.3b-rc4/cctbx/sgtbx/change_of_basis_op.cpp(70):
> CCTBX_ASSERT(c_.t().den() % s.t().den() == 0) failure.
>
> __________________________________________________
>
> Martin Moche, Ph.D., M.Sc.
> Senior scientist
> Karolinska Institutet
> MBB/SGC
> Scheeles väg 2
> 171 77 Stockholm
> Sweden
> Phone: +46-8-524 868 43
> Mob:   +46-733-229327
> Fax:   +46-8-524 868 68
> Martin.Moche at ki.se
>
>
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
>
>



-- 
-----------------------------------------------------------------
P.H. Zwart
Beamline Scientist
Berkeley Center for Structural Biology
Lawrence Berkeley National Laboratories
1 Cyclotron Road, Berkeley, CA-94703, USA
Cell: 510 289 9246
BCSB: http://bcsb.als.lbl.gov
PHENIX: http://www.phenix-online.org
CCTBX: http://cctbx.sf.net
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