[phenixbb] Problem running phenix.autobuild version 1.3-rc2
Terry Lang
terry at lego.berkeley.edu
Mon Jun 23 16:34:22 PDT 2008
Hey Everyone,
We just upgraded to the newest version of PHENIX and are now
having some problems running autobuild. The command we are running is:
phenix.autobuild data=061908.mtz seq_file=mydata.dat
model=062308polyser.pdb sg=p212121
When we run this command file with version 1.3b-rc6, the calculation
runs to completion. However, when we run version 1.3-rc2, we get the
following error message:
*******************************************************************************************************
Failed to carry out AutoBuild_build_cycle:
child process stderr output:
command: 'csh
/nfs/berger/allyn/elsa/062308ab/AutoBuild_run_1_/TEMP0/RUN_FILE_1'
Word too long.
*******************************************************************************************************
We have also tried running from the top-level directory to make the path
name shorter, but still get the same error. Has anyone else experienced
a similar problem? If so, what is the best way to address it? Please
let me know if you need additional information.
Sincerely,
Terry
--
P. Therese Lang
Postdoctoral Scholar
Alber Lab, UC Berkeley
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