[phenixbb] sa_omit-map

[Thomas C. Terwilliger]

Hi Pavel and Vladimir,
Yes, Pavel is right...we need maps_only=True as well:

phenix.autobuild data=data.mtz model=coords.pdb \
 composite_omit_type=sa_omit nproc=4 \
 maps_only=True

All the best,
Tom T

> Hi Tom,
>
> don't we need to add "maps_only=True" as well (as Manual suggests in
> section "Just make maps; don't do any building.";
> http://www.phenix-online.org/documentation/autobuild.htm) ?
>
> I'm asking because the original question was specific about it: compute
> map and "nothing extra".
>
> Thanks,
> Pavel.
>
> On 10/13/2008 2:17 PM, Thomas C. Terwilliger wrote:
>> Hi Vladimir,
>> You can do this with:
>>
>> phenix.autobuild data=data.mtz model=coords.pdb
>> composite_omit_type=sa_omit nproc=4
>>
>> All the best,
>> Tom T
>>
>>
>>
>>> After phenix.refine stage I would like to get just the sa_omit map for
>>> the
>>> whole assymetric unit (nothing extra). How can I do it?
>>>  Regards.
>>> Vladimir
>>>
>>>
>>>
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>>>
>>
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>