[phenixbb] nightly builds nit (and a question)
Nathaniel Echols
NEchols at lbl.gov
Tue Apr 21 12:25:56 PDT 2009
On Apr 21, 2009, at 11:55 AM, Ben Eisenbraun wrote:
> I'm not sure you are soliciting bugs on the nightly builds, but I
> thought
> I'd mention these. Please let me know if you don't need/want them.
Please send them, unless you're using an outdated version (for the
nightly builds, anything more than a week old can be considered
outdated). However, you should normally use the address bugs at phenix-online.org
for this - it's just an alias, you don't need to subscribe to
anything.
> I downloaded and installed the 1.4-37 nightly builds. The
> installations
> went fine for linux and OS X PPC/x86. There are some absolute
> symlinks in
> the installation that don't work:
> . . .
The symlink in PyMOL is Warren's fault - the others are ours, but they
won't cause problems while running PHENIX, since none of those
commands are used once building from source is finished (we use
'python', not 'python2.6'). I will see if I can figure out an easy
way to clean them up all at once (does anyone know how to determine
the path of a file based on a symlink to it, in a Bash script?).
> Since the nightly builds don't build the ext_ref_files, should I
> just symlink
> them to the ones in the 1.4-3 release?
The ext_ref_files directory has been replaced by chem_data - as long
as that's there, you're okay.
-Nat
-------------------
Nathaniel Echols
Lawrence Berkeley Lab
510-486-5136
NEchols at lbl.gov
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