[phenixbb] fwd: Resolve on Mac

[Miguel Ortiz Lombardia]

Dear Jim and others,

Jumping on this thread probably too late...

I found the same problem just two weeks ago. Never found the reason,  
but after installing the 1.4-4 prerelease version of phenix, this  
error vanished. In our case, the job concerned H32 data with rather  
big cell dimensions. Version 1.4-3 crashed with the memory problem  
after having tried resolve_extra_huge. In version 1.4-4,  
resolve_extra_huge managed to find all the memory required.

Best,


Miguel

Le 23 avr. 09 à 19:27, Nathaniel Echols a écrit :

> (Forwarded on behalf of James Naismith - I have no idea why the  
> server rejected this message.)
>
> Begin forwarded message:
>> From: James Naismith <naismith at st-andrews.ac.uk>
>> Date: April 23, 2009 9:24:05 AM PDT
>> To: phenixbb at phenix-online.org
>> Subject: Resolve on Mac
>>
>>
>> This is not a bug but some feature of the new Mac (or perhaps mine  
>> is broken).
>>
>> Tom Terwilliger can run the same job on his older Mac and on Linux.  
>> However, with my new Mac resolve complains that it can't allocate  
>> enough memory.
>>
>> Since my machine has 8GB of memory and Tom's has 2 GB, it is  
>> something to do with the esetup either Mac or Phenix.
>>
>> I am a newbie on the Mac, I wondered if anyone could help me. (Tom  
>> is also new to Mac and agreed to my posting here).
>>
>> best
>> Jim
>>
>>
>> Hardware Overview:
>>
>>      Model Name: MacBook Pro
>>      Model Identifier: MacBookPro5,2
>>      Processor Name: Intel Core 2 Duo
>>      Processor Speed: 2.93 GHz
>>      Number Of Processors: 1
>>      Total Number Of Cores: 2
>>      L2 Cache: 6 MB
>>      Memory: 8 GB
>>      Bus Speed: 1.07 GHz
>>      Boot ROM Version: MBP52.008E.B00
>>      SMC Version: 1.42f4
>>      Serial Number: W89090Y82QT
>>      Sudden Motion Sensor:
>>          State: Enabled
>>
>>
>>
>> -- 
>> James H. Naismith FRSE          | mailto:naismith at st-andrews.ac.uk
>> Professor of Chemical Biology   | mailto:jhn at st-andrews.ac.uk  
>> (teaching)
>> Centre for Biomolecular Sciences|Office: (44) or (0) 1334463792
>> The North Haugh                 |Secretary: (44) or (0) 1334463401
>> The University Sciences         |Fax: (44) or (0) 1334467229
>> Fife KY16 9ST U.K.              |http://www.st-and.ac.uk/~strucbio
>>
>> The University of St Andrews is a charity registered in Scotland :  
>> No SC013532
>>
>>
>>
>
>
>
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>
>
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--
Miguel Ortiz Lombardía
Architecture et Fonction des Macromolécules Biologiques
UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée )
Case 932
163 Avenue de Luminy
13288 Marseille cedex 9
France
Tel : +33(0) 491 82 55 93
Fax: +33(0) 491 26 67 20
e-mail: miguel.ortiz-lombardia at afmb.univ-mrs.fr
Web: http://www.pangea.org/mol/spip.php?rubrique2


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