[phenixbb] "phenix.fobs_minus_fobs_map" new tool in PHENIX
Tom Terwilliger
terwilliger at lanl.gov
Thu Apr 30 13:01:36 PDT 2009
Hi Pavel,
I'm having trouble using your tool...Can you unpack
~terwill/fofomap.tgz
and try:
ls
coords.pdb native.mtz native.sca peak.mtz peak.sca
[ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map
peak.mtz native.mtz phase_source=coords.pdb
========================== phenix.fobs_minus_fobs_map
=========================
Command line arguments:
['peak.mtz', 'native.mtz', 'phase_source=coords.pdb']
Sorry: No PDB file found.
Also:
phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb
========================== phenix.fobs_minus_fobs_map
=========================
Command line arguments:
['peak.sca', 'native.sca', 'coords.pdb']
*** Parameters:
f_obs_1_file_name = None
f_obs_1_label = None
f_obs_2_file_name = None
f_obs_2_label = None
high_resolution = None
low_resolution = None
sigma_cutoff = None
phase_source = None
scattering_table = *xray neutron
Sorry: No reflection data file found.
Thanks!
-Tom T
Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545
Tel: 505-667-0072 email: terwilliger at LANL.gov
Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:
> fobs_minus_fobs_map
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