[phenixbb] "phenix.fobs_minus_fobs_map" new tool in PHENIX

[Pavel Afonine]

Hi All,

the fixed version will be available in the next installer made after 
version 1.4-51:
http://www.phenix-online.org/download/nightly_builds.cgi

Pavel.


On 4/30/09 1:01 PM, Tom Terwilliger wrote:
> Hi Pavel,
> I'm having trouble using your tool...Can you unpack
>
> ~terwill/fofomap.tgz
>
> and try:
>
> ls
> coords.pdb native.mtz native.sca peak.mtz peak.sca
> [ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map 
> peak.mtz native.mtz phase_source=coords.pdb
>
> ========================== phenix.fobs_minus_fobs_map 
> =========================
>
> Command line arguments: 
> ['peak.mtz', 'native.mtz', 'phase_source=coords.pdb']
>
> Sorry: No PDB file found.
>
>
> Also:
>
>  phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb
>
> ========================== phenix.fobs_minus_fobs_map 
> =========================
>
> Command line arguments: 
> ['peak.sca', 'native.sca', 'coords.pdb']
>
> *** Parameters:
> f_obs_1_file_name = None
> f_obs_1_label = None
> f_obs_2_file_name = None
> f_obs_2_label = None
> high_resolution = None
> low_resolution = None
> sigma_cutoff = None
> phase_source = None
> scattering_table = *xray neutron
>
> Sorry: No reflection data file found.
>
>
> Thanks!
> -Tom T
>
>
>
> Thomas C. Terwilliger
> Mail Stop M888
> Los Alamos National Laboratory
> Los Alamos, NM 87545
>
> Tel:  505-667-0072                 email: terwilliger at LANL.gov 
> <mailto:terwilliger at LANL.gov>
> Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
> PHENIX web site: http:www.phenix-online.org <http://www.phenix-online.org>
> ISFI Integrated Center for Structure and Function Innovation 
> web site: http://techcenter.mbi.ucla.edu
> TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
> CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
>
>
>
>
> On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:
>
>> fobs_minus_fobs_map
>
> ------------------------------------------------------------------------
>
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