[phenixbb] question about kick map

[Thomas C. Terwilliger]

Hi Qun,
I think you are missing a final "}" in that parameters file, that's all!
All the best,
Tom T

>> Hi,
>> I am trying to use kick map to remove model bias with the following script
>> phenix.refine MR.1_refine_data.mtz MR.1_refine_001_refine_001.pdb
>> output.prefix=refine-090828a simulated_annealing=True
>> simulated_annealing.start_temperature=8000 strategy=individual_sites
>> refine.params
>>
>> However, the program says:
>> Sorry: Unknown file format: refine.params
>>
>> I do not understand why the format of refine.params cannot be read, which
>> has the following contents. Does anyone know why?
>> refinement {
>>   electron_density_maps {
>>     map {
>>       mtz_label_amplitudes = 2FOFCWT
>>       mtz_label_phases = PH2FOFCWT
>>       likelihood_weighted = True
>>       obs_factor = 2
>>       calc_factor = 1
>>       kicked= True
>>       fill_missing_f_obs_with_weighted_f_model=True
>>     }
>>     map {
>>       mtz_label_amplitudes = FOFCWT
>>       mtz_label_phases = PHFOFCWT
>>       likelihood_weighted = True
>>       obs_factor = 1
>>       calc_factor = 1
>>       kicked= True
>>       fill_missing_f_obs_with_weighted_f_model=True
>>     }
>> }
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