[phenixbb] optimizing target weights in phenix
Pavel Afonine
PAfonine at lbl.gov
Wed Feb 18 15:10:30 PST 2009
Hi Yusuf,
please use the latest version of PHENIX or CCI Apps and most likely this
error will go away:
http://www.phenix-online.org/download/
Pavel.
On 2/18/2009 3:06 PM, Yusuf Akhter wrote:
> *Hi Everybody,
> I am using phenix-1.3b.
> When i tried to use "Optimizing target weights" utility by typing
> following command line
>
> *
> *phenix.refine data.hkl model.pdb optimize_wxc=true optimize_wxu=true
>
>
> I got following error. *
>
> Traceback (most recent call last):
> File
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/command_line/refine.py",
> line 5, in <module>
> command_line.run(command_name="phenix.refine", args=sys.argv[1:])
> File
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/command_line.py",
> line 78, in run
> call_back_after_monitor_collect=call_back_after_monitor_collect)
> File
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/driver.py",
> line 1308, in run
> log = log)
> File
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/strategies.py",
> line 642, in refinement_machine
> log = log)
> File
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/weight_xray_chem.py",
> line 327, in __init__
> self.wxc_optimization()
> File
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/weight_xray_chem.py",
> line 450, in wxc_optimization
> rw, rf, b, a, a_xc = self.wx_opt_helper(w = wxc_scale_0 * wxc,
> sites=True)
> File
> "/public/xtal/phenix/phenix-1.3b/phenix-1.3b/phenix/phenix/refinement/weight_xray_chem.py",
> line 387, in wx_opt_helper
> verbose = 0)
> TypeError: __init__() takes at least 5 non-keyword arguments (3 given)
>
>
> *May anybody tell me please how can i fix these errors??
>
>
> Thanks in advance.
> yusuf
>
> *
>
>
>
>
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>
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