[phenixbb] Will phenix.refine read CNS *.cv files?

Scott Classen sclassen at lbl.gov
Wed Jan 14 17:46:39 PST 2009


Thanks Ralf,

I received this error:

iotbx.cns.reflection_reader.CNS_input_Error: line 1, word "REMARK":  
unrecognized keyword

I then deleted the 4 lines of remarks from the top of the cv file and  
now it works! ... automagically, just as I was hoping.

Thanks^6,
Scott



On Jan 14, 2009, at 5:38 PM, Ralf W. Grosse-Kunstleve wrote:

> Hi Scott,
>
>> When I try to run phenix.refine --dry_run my_model.pdb  
>> my_CNS_cv_file.cv
>>
>> I get the following error:
>>
>> Processing inputs. This may take a minute or two.
>> Sorry: Unknown file format: my_CNS_cv_file.cv
>>
>>
>> Any ideas?
>
> Please try this command:
>
>  iotbx.cns.reflection_reader my_CNS_cv_file.cv
>
> Hopefully this will give you a better error message.
>
> phenix.refine should read your file if the format is correct.
>
> Let me know if this doesn't help.
>
> Ralf
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