[phenixbb] Assertion Error when using kicked maps in solvent update

Schubert, Carsten [PRDUS] CSCHUBER at its.jnj.com
Tue Jul 21 07:54:27 PDT 2009


Hi

In 1.4.106 I get the following Assertion Error when I use kicked maps
(refinement.ordered_solvent.use_kick_maps=True) in the solvent update
section:

Traceback (most recent call last):
  File
"/raidnet/xdata1/programs/phenix-1.4-106/phenix/phenix/command_line/refi
ne.py", line 19, in <module>
    command_line.run(command_name="phenix.refine", args=sys.argv[1:])
  File
"/raidnet/xdata1/programs/phenix-1.4-106/phenix/phenix/refinement/comman
d_line.py", line 89, in run
    call_back_handler=call_back_handler)
  File
"/raidnet/xdata1/programs/phenix-1.4-106/phenix/phenix/refinement/driver
.py", line 1125, in run
    call_back_handler       = call_back_handler)
  File
"/raidnet/xdata1/programs/phenix-1.4-106/phenix/phenix/refinement/strate
gies.py", line 358, in refinement_machine
    log               = log)
  File
"/raidnet/xdata1/programs/phenix-1.4-106/cctbx_project/mmtbx/solvent/ord
ered_solvent.py", line 205, in __init__
    use_kick_map = self.params.use_kick_maps).peaks_mapped()
  File
"/raidnet/xdata1/programs/phenix-1.4-106/cctbx_project/mmtbx/solvent/ord
ered_solvent.py", line 394, in find_peaks
    log             = self.log)
  File
"/raidnet/xdata1/programs/phenix-1.4-106/cctbx_project/mmtbx/find_peaks.
py", line 98, in __init__
    crystal_gridding_tags = fft_map.tags()
  File
"/raidnet/xdata1/programs/phenix-1.4-106/cctbx_project/cctbx/maptbx/__in
it__.py", line 152, in tags
    return crystal_gridding_tags(self)
  File
"/raidnet/xdata1/programs/phenix-1.4-106/cctbx_project/cctbx/maptbx/__in
it__.py", line 158, in __init__
    assert gridding.symmetry_flags() is not None
AssertionError

Running from the same .def file w/o kicked maps works fine. Let me know
if you need more info to debug this.

Cheers,

Carsten
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