[phenixbb] IGNORE/FIXED Re: Autosol error

[Thomas C. Terwilliger]

Hi Francis,

The current (including 1.4-87) phenix autosol command-line interpreter
won't let you specify "native.something=something" and
"native.something_else=something_else".  In this case you have to use a
parameters file, as you found out.  In more recent versions an error
message tries to make this more clear, and with your inputs would give
this output:

Please use a parameters file for this run...you cannot have more than one
native.xxx= or more than one deriv.xxx= or more than one wavelength.xxx=
on the command line...Your command includes:
native.data=native.sca native.labels=IMEAN SIGIMEAN
which uses 'native'.xxx 2 times.

All the best,
Tom T


>> Yowza,,
>>
>> command line parsing of options to autosol.eff seems to be broken in
>> 1.4-87 (at least with this command line).
>>
>> Editing the autosol.eff and properly formatting deriv and native helped.
>>
>> FR
>>
>>
>> On Jul 31, 2009, at 3:04 PM, Francis E Reyes wrote:
>>
>>> All
>>>
>>> When issuing
>>>
>>> phenix.autosol native.data=scala_072809B_3_001.mtz
>>> deriv.data=scala_072909A_3_001.mtz deriv.atom_type=Ir deriv.sites=5
>>> deriv.inano=noinano native.labels='IMEAN SIGIMEAN'
>>> deriv.labels='IMEAN SIGIMEAN'
>>>
>>>
>>> I get the error
>>>
>>>
>>>
>>> ****************************************
>>> AutoSol Input failed
>>> For SIR datasets please enter two datafiles or datasets.(native
>>> +deriv)
>>>  Please treat MIR as a series of SIR datasets
>>>
>>> ...to specify a particular set of data you can specify one of the
>>> following (command-line format shown, for a script take out the '='
>>> and use the keyword 'group_labels_list' instead):
>>>
>>> native.labels='IMEAN SIGIMEAN'
>>> deriv.labels='IMEAN SIGIMEAN'
>>> native.labels='I(+) SIGI(+) I(-) SIGI(-)'
>>> deriv.labels='I(+) SIGI(+) I(-) SIGI(-)'
>>>
>>> ****************************************
>>>
>>> Any ideas?
>>>
>>>
>>> thanks
>>>
>>> FR
>>>
>>> ---------------------------------------------
>>> Francis Reyes M.Sc.
>>> 215 UCB
>>> University of Colorado at Boulder
>>>
>>> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>>>
>>> 8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D
>>>
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>>> phenixbb mailing list
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>>
>> ---------------------------------------------
>> Francis Reyes M.Sc.
>> 215 UCB
>> University of Colorado at Boulder
>>
>> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>>
>> 8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D
>>
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>> phenixbb mailing list
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