[phenixbb] extract sequence from pdb

[Maia Cherney]

Thank you Francis and Sabine for your help.

phenix.print_sequence worked fine. The only problem I had with one pdb, 
for some reason the sequence of each subunit was doubled. There was no 
such problem with the pdbset.

Maia


Maia

Francis E Reyes wrote:
> phenix.print_sequence
>
>
> phenix.* has a lot of good utils I didnt know about until I tab 
> completed it.
>
> FR
>
> On Jun 8, 2009, at 9:17 AM, chern wrote:
>
>> Hi everybody,
>>
>> I am building a model of protein and the sequence has wrong parts. I 
>> want to compare it to the original sequence side-by-side. How can I 
>> extract a one-letter sequence from the pdb file?  This information 
>> should be easily generated by auto build. I mean, I give the pdb and 
>> get the fasta format sequence.
>>
>> Maia
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://www.phenix-online.org/mailman/listinfo/phenixbb
>
> ---------------------------------------------
> Francis Reyes M.Sc.
> 215 UCB
> University of Colorado at Boulder
>
> gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
>
> 8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D
>
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://www.phenix-online.org/mailman/listinfo/phenixbb
>