[phenixbb] phenix and PAE kernels

[nick at silvaggi.com]

Dear List,

Sorry if this is a naive question, but is there a known bug with  
phenix (or python?) on PAE kernels? I have looked on  
phenix-online.org, but did not find anything. This problem is  
independent of the phenix version (I have tried 1.4-92, 1.4-3, 1.3,  
and several releases of cci_apps) and occurs with almost all of the  
programs (most fail in the cci_apps test_apps script). The problem  
appears to be specific to the PAE kernels, since the same programs run  
fine in the non-PAE counterparts. I am running Fedora 10 with kernel  
versions 2.6.27.24-170.2.68/PAE and 2.6.27.21-170.2.56/PAE. Phenix  
programs fail under both PAE kernels, but are fine under the non-PAE  
kernels. Thanks in advance for any help you can provide.

Best regards,
Nick Silvaggi

long int too large to convert
Traceback (most recent call last):
   File
"/usr/swr/cci_apps-07_25_1259/cci_apps_sources/elbow/elbow/command_line/builder.py",  
line
10, in <module>
     from elbow.chemistry.any_chemical_format_reader \
   File
"/usr/swr/cci_apps/cci_apps_sources/elbow/elbow/chemistry/any_chemical_format_reader.py",
line 3, in <module>
   File  
"/usr/swr/cci_apps/cci_apps_sources/elbow/elbow/chemistry/SimpleMoleculeClass.py",
line 16, in <module>
   File  
"/usr/swr/cci_apps/cci_apps_sources/elbow/elbow/utilities/monomer_utilities.py",
line 2, in <module>
   File
"/usr/swr/cci_apps-07_25_1259/cci_apps_sources/elbow/elbow/command_line/__init__.py",
line 4, in <module>

   File
"/usr/swr/cci_apps-07_25_1259/cci_apps_sources/elbow/elbow/command_line/__init__.py",
line 3, in <module>

   File  
"/usr/swr/cci_apps/cci_apps_sources/mmtbx/mmtbx/refinement/print_statistics.py",
line 2, in <module>
   File
"/usr/swr/cci_apps-07_25_1259/cci_apps_sources/elbow/elbow/command_line/__init__.py",
line 1, in <module>
     # packaging
   File
"/usr/swr/cci_apps-07_25_1259/cci_apps_sources/elbow/elbow/command_line/__init__.py",
line 518, in <module>

   File  
"/usr/swr/cci_apps/cci_apps_sources/boost_adaptbx/boost/python.py",  
line 68, in
__init__
OverflowError: long int too large to convert