[phenixbb] autobuild

Thomas C. Terwilliger terwilliger at lanl.gov
Fri Oct 16 06:15:29 PDT 2009


Hi Colin,
I haven't tried it, but yes, you should be able to do this

If you specify

two_fofc_in_rebuild=True

then autobuild should use the phenix.refine map in rebuilding.  Then you
can tell phenix refine how to make a map (or how to do anything else you
want to specify) with a standard phenix.refine parameters file
"refine.eff" by saying:

refine_eff_file_list=refine.eff

Note that a few parameters in phenix.refine are specified directly by
phenix.autobuild (they are listed in the autobuild manual) but by far most
can be set with a refine.eff file.

Let me know if that doesn't do it!
All the best,
Tom T

>> Hi,
>>
>> can autobuild be setup to use kicked maps when starting from a
>> molecular replacement model?
>>
>> Thanks
>>
>> Colin
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>>




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