[phenixbb] Defining planarity for Phenix.refine

Peter Grey petgxray at gmail.com
Mon Apr 19 03:23:29 PDT 2010


Dear all,

I have an RNA/Protein big complex at low resolution (roughly 4A). I would
like to have the base pairs in the RNA as close as possible to ideal base
pairs.
I added restraints for distances between base pair hydrogen-bonding atoms
but this is not enough to ensure that the bases will be  in the same plane.
Could you suggest how to define for  Phenix.refine this planarity ?


I am grateful for your advice,


Peter
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