[phenixbb] No clash evaluation between symmetry mates in phenix.refine

[Ralf W. Grosse-Kunstleve]

Hi Keitaro,

> By the way, in this situation, I'm wondering what the  appropriate way

> for bulk solvent correction is.
> How is the solvent mask  calculated in phenix.refine?
> Is the protein region, which overlaps with  symmetry mates,  included
> in solvent mask with smaller  occupancies?

No, we're not doing anything special. -- I think it would be quite tricky
to do something that's theoretically better than what we have right now,
and I wouldn't be surprised if it didn't make any significant difference
for the end results, after all the work.

Ralf