[phenixbb] solve won't run.

Tom Terwilliger terwilliger at lanl.gov
Thu Jul 8 09:41:03 PDT 2010


Hi Alex,
Try this:

you need to be root
edit /etc/sysconfig/selinux:

SELINUX=disabled

then reboot.

Let me know if this doesn't do it.

All the best,
Tom T

On Jul 8, 2010, at 10:10 AM, alexander.singer at utoronto.ca wrote:

> Hi -- I installed phenix-installer-1.6-289-intel-linux-2.6.tar on my  
> Fedora Core 5 linux partition and most things run -- but not solve  
> (which I was first trying from autosolve).  As recommened by the  
> documentation, when I type phenix.solve, here's what I have ---
>
> [root at ausinger oth32_c]# phenix.solve
> binary=/usr/local/phenix-1.6-289/build/intel-linux-2.6/solve_resolve/ 
> exe/solve
> SOLVEDIR=/usr/local/phenix-1.6-289/solve_resolve/ext_ref_files
> SYMOP=/usr/local/phenix-1.6-289/solve_resolve/ext_ref_files/symop.lib
> SYMINFO=/usr/local/phenix-1.6-289/solve_resolve/ext_ref_files/ 
> syminfo.lib
> CCP4_OPEN=UNKNOWN
> SOLVE_RESOLVE_MALLOC_MAX=1862380800
>
> /usr/local/phenix-1.6-289/build/intel-linux-2.6/solve_resolve/exe/ 
> solve: error w hile loading shared libraries: /usr/local/ 
> phenix-1.6-289/build/intel-linux-2.6/l ib/libimf.so: cannot restore  
> segment prot after reloc: Permission denied
>
> Do you know what I can do about this?
>
> Thanks
>
> Alex
>
>
> -- 
> Dr. Alex Singer
> C.H. Best Institute
> 112 College St. Room 70
> University of Toronto
> Toronto, Canada, M5G 1L6
> 416-978-4033
>
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb


Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: terwilliger at LANL.gov
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss




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