[phenixbb] How to define multiple rebuilding region?

J J phenix.upitt at gmail.com
Wed Jul 14 10:42:44 PDT 2010


Dear All,

I am trying to use phenix.autobuild to rebuild some poor regions in my
model.
Since I know which part should be rebuilt, I was thinking using
rebuild_chain_list in combination with rebuild_res_end_list and
rebuild_res_start_list.
The manual suggested: " You can specify more than one region by using the
Parameter Group Options button to add lines."  What is this Parameter Group
Options button? I am running through an .eff file.

I have tried something like this:

rebuild_chain_list= " 'A, 'B' "
rebuild_res_end_list= 50
rebuild_res_start_list=10

However, it does not work. It becomes more obscure to me what if I want to
rebuild more than one region in a single chain? Thanks in advance.

Jason
------------------------------------------------
University of Pittsburgh School of Medicine
3501 Fifth Avenue
Pittsburgh, PA 15261
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