[phenixbb] omit map

[Pavel Afonine]

Hi Maia,

just a remark: probably the quickest and simplest option to see if your 
ligand is there is to do these two steps:

1) physically remove the ligand from PDB file;
2) compute Average Kick mFo-DFc Map using phenix.refine or phenix.maps.

Pavel.

> I am wondering what is the difference between an omit map that is 
> produced by the refinement without a ligand and an omit map produced 
> by autobuild.