[phenixbb] kicked maps

Maia Cherney chern at ualberta.ca
Thu May 13 11:26:51 PDT 2010


Hi Pavel,
I ran phenix.refine to produce a kicked map after deleting my ligand (to 
get an omit map).
I got an error message. Sorry: Duplicate mtz_label_amplitudes:2FOFCWT


Here is part of my .def file: How should I change it?

 map {
      mtz_label_amplitudes = None
      mtz_label_phases = None
      likelihood_weighted = None
      obs_factor = None
      calc_factor = None
      kicked = False
      fill_missing_f_obs_with_weighted_f_model = True
    }
    map {
      mtz_label_amplitudes = "2FOFCWT"
      mtz_label_phases = "PH2FOFCWT"
      likelihood_weighted = True
      obs_factor = 2
      calc_factor = 1
      kicked = True
      fill_missing_f_obs_with_weighted_f_model = True
    }
    map {
      mtz_label_amplitudes = "FOFCWT"
      mtz_label_phases = "PHFOFCWT"
      likelihood_weighted = True
      obs_factor = 1
      calc_factor = 1
      kicked = True
      fill_missing_f_obs_with_weighted_f_model = False
    }
    map {
      mtz_label_amplitudes = "2FOFCWT_no_fill"
      mtz_label_phases = "PH2FOFCWT_no_fill"
      likelihood_weighted = True
      obs_factor = 2
      calc_factor = 1
      kicked = False
      fill_missing_f_obs_with_weighted_f_model = False
    }




More information about the phenixbb mailing list