[phenixbb] phenix refinement question

Pavel Afonine pafonine at lbl.gov
Fri Nov 19 19:01:35 PST 2010


  Hi Keitaro,

R.Read, Acta Cryst. (1999). D55, 1759-1764.

You can always turn this off using "main.outliers_rejection=False".
Let us know if you have any questions.

Pavel.


On 11/19/10 6:52 PM, Keitaro Yamashita wrote:
> Dear Pavel Afonine
>
>> - outliers detection and removing: available in phenix.refine, not in Refmac;
> I'm very interested in this matter.
> In my case, I found the following lines in phenix.refine logfile:
>
> basic_wilson_outliers    = 53
> extreme_wilson_outliers  = 84
> beamstop_shadow_outliers = 49
> model_based_outliers     = 16
> total                    = 133
>
> Could you tell me some references about these theories?
>
> Especially I'm worrying about model_based_outliers.
> Should I be careful about the number of this?
>
>
> Thanks in advance.
>
> K. Yamashita
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