[phenixbb] nucleic acid secondary restraints breaking in 1.7.1-743

Francis E Reyes Francis.Reyes at Colorado.EDU
Sun Aug 14 16:26:34 PDT 2011


Hi all


Traceback (most recent call last):
  File "/usr/local/phenix-1.7.1-743/phenix/phenix/command_line/refine.py", line 11, in <module>
    command_line.run(command_name="phenix.refine", args=sys.argv[1:])
  File "/usr/local/phenix-1.7.1-743/phenix/phenix/refinement/command_line.py", line 67, in run
    overwrite = command_line_interpreter.command_line.options.overwrite)
  File "/usr/local/phenix-1.7.1-743/phenix/phenix/refinement/driver.py", line 112, in __init__
    hbond_params=self.params.hydrogen_bonding)
  File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/__init__.py", line 494, in create_hbond_proxies
    log=log)
  File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/__init__.py", line 286, in hydrogen_bond_proxies_from_selections
    log=log)
  File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/base_pairing.py", line 415, in create_hbond_proxies
    if distance_values[i][2] != '_':
IndexError: tuple index out of range


When specifying a single base pair when using secondary_structure nucleic acids restraints


Any ideas?

Thanks!

F



---------------------------------------------
Francis E. Reyes M.Sc.
215 UCB
University of Colorado at Boulder







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