[phenixbb] nucleic acid secondary restraints breaking in 1.7.1-743
Nathaniel Echols
nechols at lbl.gov
Sun Aug 14 16:29:32 PDT 2011
On Sun, Aug 14, 2011 at 4:26 PM, Francis E Reyes
<Francis.Reyes at colorado.edu> wrote:
> Traceback (most recent call last):
> File "/usr/local/phenix-1.7.1-743/phenix/phenix/command_line/refine.py", line 11, in <module>
> command_line.run(command_name="phenix.refine", args=sys.argv[1:])
> File "/usr/local/phenix-1.7.1-743/phenix/phenix/refinement/command_line.py", line 67, in run
> overwrite = command_line_interpreter.command_line.options.overwrite)
> File "/usr/local/phenix-1.7.1-743/phenix/phenix/refinement/driver.py", line 112, in __init__
> hbond_params=self.params.hydrogen_bonding)
> File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/__init__.py", line 494, in create_hbond_proxies
> log=log)
> File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/__init__.py", line 286, in hydrogen_bond_proxies_from_selections
> log=log)
> File "/usr/local/phenix-1.7.1-743/cctbx_project/mmtbx/secondary_structure/base_pairing.py", line 415, in create_hbond_proxies
> if distance_values[i][2] != '_':
> IndexError: tuple index out of range
>
> When specifying a single base pair when using secondary_structure nucleic acids restraints
Could you please try the latest nightly build? This may have been
fixed already.
-Nat
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