[phenixbb] how to move one domain of a protein in respect to another?

[Pavel Afonine]

  Hi Tatyana,

without knowing much details about how you want to move the domains I 
guess these tools may be handy:

phenix.pdbtools model.pdb rotate="10 20 30" translate="3 5 7"

and

phenix.superpose_pdbs pdb_file_fixed.pdb pdb_file_moving.pdb

and may be

phenix.pdbtools model.pdb --geometry-regularization

Pavel.

On 2/9/11 11:57 AM, Tatyana Sysoeva wrote:
> Dear all,
>
> I am working with a protein which form homooligomeric assembly. Each 
> subunit of the assembly consists of 2 subdomains. I would like to 
> create chimeras with the subdomains moved with respect to each other, 
> keeping the linkers.
>
> I am wondering what would be the easiest way to do this?
>
> Any suggestions are welcome!
>
>
> Sincerely,
> Tanya