[phenixbb] [Fwd: Re: elbow.join_cif_files error]

Maia Cherney chern at ualberta.ca
Tue Jun 14 07:43:53 PDT 2011


Hi,

I run command line elbow.join_cif_files ligand1.cif ligand2.cif 
ligand3.cif. As I understand, ligand1.cif and ligand2.cif are cif files 
present in the directory, the ligand3.cif should be made after joining 
the first two cifs.

I get this error

Traceback (most recent call last):
 File 
"/usr/local/phenix-1.7.1-743/elbow/elbow/command_line/join_cif_files.py", 
line 245, in <module>
   run(filenames, target)
 File 
"/usr/local/phenix-1.7.1-743/elbow/elbow/command_line/join_cif_files.py", 
line 145, in run
   include_commented_restraints=1, #include_commented_restraints,
 File 
"/usr/local/phenix-1.7.1-743/elbow/elbow/formats/monomer_library_cif_parser.py", 
line 185, in parse_cif
   raise RuntimeError('long tmp')
RuntimeError: long tmp


Maia







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