[phenixbb] Errors in latest build dev-790

Yuri yuri.pompeu at ufl.edu
Sun Jun 19 17:53:33 PDT 2011


Dear phenixers,
I ran into some errors after my last upgrade.
First, I noticed that all of the data plots are gone in the GUI, 
instead I get a message that says :plotting disabled due to missing 
library.
Second I was running phenix.refine and got the following message, they 
may be related I am not positive:


AttributeError : 'RefinementStatsPlot' object has no attribute 
'null_fmt'

Traceback (most recent call last):
   File 
"/home/local/UFAD/yuri.pompeu/Desktop/PHENIX_installation/phenix-installer-dev-790/phenix-dev-790/phenix/wxGUI2/Runtime.py", 
line 172, in OnUpdate
     self.propagate_event(event, "OnUpdate")
   File 
"/home/local/UFAD/yuri.pompeu/Desktop/PHENIX_installation/phenix-installer-dev-790/phenix-dev-790/phenix/wxGUI2/Runtime.py", 
line 228, in propagate_event
     fn(event)
   File 
"/home/local/UFAD/yuri.pompeu/Desktop/PHENIX_installation/phenix-installer-dev-790/phenix-dev-790/phenix/wxGUI2/Programs/Refine/Output.py", 
line 536, in OnUpdate
     self.stats_plot.update_stats(callback.data)
   File 
"/home/local/UFAD/yuri.pompeu/Desktop/PHENIX_installation/phenix-installer-dev-790/phenix-dev-790/phenix/wxGUI2/Programs/Refine/Output.py", 
line 796, in update_stats
     stats.bs_ave)
   File 
"/home/local/UFAD/yuri.pompeu/Desktop/PHENIX_installation/phenix-installer-dev-790/phenix-dev-790/phenix/wxGUI2/Programs/Refine/Output.py", 
line 809, in set_plots
     ax1().xaxis.set_major_formatter(self.null_fmt)
AttributeError: 'RefinementStatsPlot' object has no attribute 
'null_fmt'



Platform info:
__FILE__ = 
/net/anaconda/scratch1/phenix/phenix-dev-790/cctbx_project/boost_adaptbx/meta_ext.cpp
__DATE__ = Jun 17 2011
__TIME__ = 04:12:36
__x86_64__
__linux
__GNUC__ = 3
__GNUC_MINOR__ = 4
__GNUC_PATCHLEVEL__ = 2
boost::python::cxxabi_cxa_demangle_is_broken(): false
__GXX_WEAK__ = 1
__LP64__ = 1
__VERSION__ = 3.4.2 20041017 (Red Hat 3.4.2-6.fc3)
FE_INEXACT = 32
FE_DIVBYZERO = 4
FE_UNDERFLOW = 16
FE_OVERFLOW = 8
FE_INVALID = 1
FE_ALL_EXCEPT = 61
__SSE2__ = 1
BOOST_LIB_VERSION = 1_47
PY_VERSION = 2.7.2
PYTHON_API_VERSION = 1013
sizeof(bool) = 1
sizeof(short) = 2
sizeof(int) = 4
sizeof(long) = 8
sizeof(std::size_t) = 8
sizeof(void*) = 8
sizeof(long long) = 8
sizeof(float) = 4
sizeof(double) = 8
sizeof(long double) = 16
sizeof(boost::int32_t) = 4
sizeof(boost::uint32_t) = 4
sizeof(wchar_t) = 4
__PTRDIFF_TYPE__
Py_USING_UNICODE
sizeof(PY_UNICODE_TYPE) = 2
gnu libc version: 2.5
BOOST_ADAPTBX_TYPE_ID_SIZE_T_EQ_UNSIGNED_LONG
os.name: posix
sys.platform: linux2
sys.byteorder: little
platform.platform(): 
Linux-2.6.18-238.12.1.el5-x86_64-with-redhat-5.6-Tikanga
platform.architecture(): ('64bit', 'ELF')
floating_point_exceptions.division_by_zero_trapped: False
floating_point_exceptions.invalid_trapped: False
floating_point_exceptions.overflow_trapped: False
number of processors: 2
Memory total:  3,692,077,056
Memory free:      16,236,544
import thread: OK
"hello" = ['h', 'e', 'l', 'l', 'o']
u"hello" = ['h', '\x00', 'e', '\x00', 'l', '\x00', 'l', '\x00', 'o', 
'\x00']
u"\u00C5" = ['\xc5', '\x00'] as utf-8 = ['\xc3', '\x85']
LATIN CAPITAL LETTER A WITH RING ABOVE = Å


-- 
Yuri Pompeu


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