[phenixbb] error in the newer version of phenix

[Maia Cherney]

Thanks,

Nathaniel and Peter. Now it works

Maia

Nathaniel Echols wrote:
> Delete the entire REMARK section at the start of the PDB file, and the
> error should go away.
>
> On Tue, Mar 1, 2011 at 8:39 AM, Maia Cherney <chern at ualberta.ca> wrote:
>   
>> Hi phenixers,
>>
>> I just installed the version phenix-1.7-650 on ubuntu 9.4 and tried a test
>> run. My previous version runs fine. The new version gives me this error
>>
>> =============================== refinement start
>> ==============================
>>
>> Traceback (most recent call last):
>>  File "/usr/local/phenix-1.7-650/phenix/phenix/command_line/refine.py", line
>> 11, in <module>
>>   command_line.run(command_name="phenix.refine", args=sys.argv[1:])
>>  File "/usr/local/phenix-1.7-650/phenix/phenix/refinement/command_line.py",
>> line 89, in run
>>   call_back_handler=call_back_handler)
>>  File "/usr/local/phenix-1.7-650/phenix/phenix/refinement/driver.py", line
>> 1207, in run
>>   call_back_handler       = call_back_handler)
>>  File "/usr/local/phenix-1.7-650/phenix/phenix/refinement/strategies.py",
>> line 220, in refinement_machine
>>   xray_structure = model.xray_structure,)
>>  File "/usr/local/phenix-1.7-650/phenix/phenix/refinement/strategies.py",
>> line 124, in extract_from_pdb_header
>>   xray_structure = xray_structure)
>>  File "/usr/local/phenix-1.7-650/cctbx_project/mmtbx/f_model.py", line 327,
>> in __init__
>>   twin_law_xyz = sgtbx.rt_mx(symbol=self.twin_law, r_den=12, t_den=144)
>> RuntimeError: cctbx Error: Parse error: unexpected character:
>>  NULL
>>  ^
>> Please, take a look at the error and advise me how to fix it.
>>
>> Maia
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>>
>>     
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