March 2011 Archives by author
Starting: Tue Mar 1 01:05:21 PST 2011
Ending: Thu Mar 31 19:05:56 PDT 2011
Messages: 248
- [phenixbb] Bay Area and Beyond Phenix User Meeting
Paul Adams
- [phenixbb] low resolution map weirdness with newer releases
Paul Adams
- [phenixbb] error in the newer version of phenix
Pavel Afonine
- [phenixbb] number of cycles
Pavel Afonine
- [phenixbb] Important change in phenix.refine output: MTZ file with data and map coefficients
Pavel Afonine
- [phenixbb] Important change in phenix.refine output: MTZ file with data and map coefficients
Pavel Afonine
- [phenixbb] ambiguous ligand density
Pavel Afonine
- [phenixbb] Average maps (*not* NCS averaging)
Pavel Afonine
- [phenixbb] Average maps (*not* NCS averaging)
Pavel Afonine
- [phenixbb] most appropriate map for ligand fitting/interaction with FMN
Pavel Afonine
- [phenixbb] Refinement Strategy vs. R gap
Pavel Afonine
- [phenixbb] The individual site refinement for Low resolution data (~3.8A)
Pavel Afonine
- [phenixbb] modelvsdata output ksol and bsol are 0
Pavel Afonine
- [phenixbb] The individual site refinement for Low resolution data (~3.8A)
Pavel Afonine
- [phenixbb] modelvsdata output ksol and bsol are 0
Pavel Afonine
- [phenixbb] refinement for ligands with alternative conformation
Pavel Afonine
- [phenixbb] B factor sharpening in twinned maps
Pavel Afonine
- [phenixbb] "FOM" or HL coeffs from model?
Pavel Afonine
- [phenixbb] refinement for ligands with alternative conformation
Pavel Afonine
- [phenixbb] Another question about twinned maps
Pavel Afonine
- [phenixbb] Low rmsd values
Pavel Afonine
- [phenixbb] rotamers
Pavel Afonine
- [phenixbb] pdb editor after autobuild
Pavel Afonine
- [phenixbb] Low rmsd values
Pavel Afonine
- [phenixbb] pdb editor after autobuild
Pavel Afonine
- [phenixbb] rotamers
Pavel Afonine
- [phenixbb] rotamers
Pavel Afonine
- [phenixbb] B factor statistics
Pavel Afonine
- [phenixbb] weird B factor refinement
Pavel Afonine
- [phenixbb] local B-factors
Pavel Afonine
- [phenixbb] r_free_flags.export_for_ccp4 option of iotbx.reflection_file_editor
Pavel Afonine
- [phenixbb] free R test or work set flag value
Pavel Afonine
- [phenixbb] anomalous difference map
Pavel Afonine
- [phenixbb] ligand problem in phenix.refine
Pavel Afonine
- [phenixbb] ligand problem in phenix.refine
Pavel Afonine
- [phenixbb] rotamers
Pavel Afonine
- [phenixbb] Target weight optimization (wxu_scale and wxu)
Pavel Afonine
- [phenixbb] Split Occupancy of a ligand and water
Pavel Afonine
- [phenixbb] Split Occupancy of a ligand and water
Pavel Afonine
- [phenixbb] low resolution map weirdness with newer releases
Pavel Afonine
- [phenixbb] are the rigid_body group shifts cummulative or stepwise?
Pavel Afonine
- [phenixbb] rotamers
Pavel Afonine
- [phenixbb] how convert mtz in xplor format
Pavel Afonine
- [phenixbb] how convert mtz in xplor format
Pavel Afonine
- [phenixbb] whether phenix.refine can do Boverall refinement
Pavel Afonine
- [phenixbb] Getting the triangulated solvent excluded surface of a protein (PDB) as a .obj file
Francois Berenger
- [phenixbb] [ccp4bb] Getting the triangulated solvent excluded surface of a protein (PDB) as a .obj file
Francois Berenger
- [phenixbb] Average maps (*not* NCS averaging)
Donnie Berkholz
- [phenixbb] Average maps (*not* NCS averaging)
Donnie Berkholz
- [phenixbb] Average maps (*not* NCS averaging)
Donnie Berkholz
- [phenixbb] rotamers
Donnie Berkholz
- [phenixbb] ambiguous ligand density
Edward A. Berry
- [phenixbb] Only one solution in AutoMR with very negative LLG
Edward A. Berry
- [phenixbb] anomalous difference map
Shya Biswas
- [phenixbb] Peptides bonds in cyclic peptides
Krzysztof Bzymek
- [phenixbb] error in the newer version of phenix
Maia Cherney
- [phenixbb] error in the newer version of phenix
Maia Cherney
- [phenixbb] number of cycles
Maia Cherney
- [phenixbb] [Fwd: Re: number of cycles]
Maia Cherney
- [phenixbb] low resolution map weirdness with newer releases
Scott Classen
- [phenixbb] low resolution map weirdness with newer releases
Scott Classen
- [phenixbb] are the rigid_body group shifts cummulative or stepwise?
Scott Classen
- [phenixbb] changing the project directory
Charisse Crenshaw
- [phenixbb] Average maps (*not* NCS averaging)
Frank von Delft
- [phenixbb] rotamers
Frank von Delft
- [phenixbb] rotamers
Frank von Delft
- [phenixbb] "FOM" or HL coeffs from model?
Dyda
- [phenixbb] error in the newer version of phenix
Nathaniel Echols
- [phenixbb] Average maps (*not* NCS averaging)
Nathaniel Echols
- [phenixbb] Binary Installation failure on Ubuntu
Nathaniel Echols
- [phenixbb] XYZ refinement vs individual sites refinement
Nathaniel Echols
- [phenixbb] fwd: Re: Need help in refining my twinned P6322(apparent) dataset
Nathaniel Echols
- [phenixbb] phenix.maps2mtz
Nathaniel Echols
- [phenixbb] Refinement Strategy vs. R gap
Nathaniel Echols
- [phenixbb] changing the project directory
Nathaniel Echols
- [phenixbb] Refinement Strategy vs. R gap
Nathaniel Echols
- [phenixbb] The individual site refinement for Low resolution data (~3.8A)
Nathaniel Echols
- [phenixbb] changing the project directory
Nathaniel Echols
- [phenixbb] refinement for ligands with alternative conformation
Nathaniel Echols
- [phenixbb] "FOM" or HL coeffs from model?
Nathaniel Echols
- [phenixbb] Multiprocessors/parallel runs keywords
Nathaniel Echols
- [phenixbb] Low rmsd values
Nathaniel Echols
- [phenixbb] rotamers
Nathaniel Echols
- [phenixbb] rotamers
Nathaniel Echols
- [phenixbb] rotamers
Nathaniel Echols
- [phenixbb] Multiprocessors/parallel runs keywords
Nathaniel Echols
- [phenixbb] free R test or work set flag value
Nathaniel Echols
- [phenixbb] free R test or work set flag value
Nathaniel Echols
- [phenixbb] fwd: Reminder: Fourth annual CCP4 summer school in USA, at APS, June 7-15
Nathaniel Echols
- [phenixbb] r_free_flags.export_for_ccp4 option of iotbx.reflection_file_editor
Nathaniel Echols
- [phenixbb] anomalous difference map
Nathaniel Echols
- [phenixbb] anomalous difference map
Nathaniel Echols
- [phenixbb] differences between command line and GUI?
Nathaniel Echols
- [phenixbb] secondary structure restraints
Nathaniel Echols
- [phenixbb] phenix migration
Nathaniel Echols
- [phenixbb] Bulk solvent correction
Nathaniel Echols
- [phenixbb] local B-factors
Priit Eek
- [phenixbb] Glycan Links/Restraints
Damian Ekiert
- [phenixbb] Glycan Links/Restraints
Damian Ekiert
- [phenixbb] rotamers
Phil Evans
- [phenixbb] Average maps (*not* NCS averaging)
Vellieux Frederic
- [phenixbb] how convert mtz in xplor format
Vellieux Frederic
- [phenixbb] Postdoctoral position in Grenoble, France - Living deep
Eric Girard
- [phenixbb] Split Occupancy of a ligand and water
Brandon Goblirsch
- [phenixbb] Average maps (*not* NCS averaging)
Stephen Graham
- [phenixbb] Average maps (*not* NCS averaging)
Stephen Graham
- [phenixbb] Average maps (*not* NCS averaging)
Stephen Graham
- [phenixbb] Average maps (*not* NCS averaging)
Green, Todd
- [phenixbb] Only one solution in AutoMR with very negative LLG
Green, Todd
- [phenixbb] Binary Installation failure on Ubuntu
Ralf W. Grosse-Kunstleve
- [phenixbb] Peptides bonds in cyclic peptides
Ralf W. Grosse-Kunstleve
- [phenixbb] modified nucleotide not linked
Ralf W. Grosse-Kunstleve
- [phenixbb] Low rmsd values
Teemu Haikarainen
- [phenixbb] number of cycles
Jeff Headd
- [phenixbb] number of cycles
Jeff Headd
- [phenixbb] reference model
Jeff Headd
- [phenixbb] secondary structure restraints
Bradley Hintze
- [phenixbb] B factor sharpening in twinned maps
Mary Ho
- [phenixbb] Another question about twinned maps
Mary Ho
- [phenixbb] pdb editor after autobuild
Jason
- [phenixbb] anomalous difference map
Jason
- [phenixbb] anomalous difference map
Jason
- [phenixbb] anomalous difference map
Jason
- [phenixbb] Average maps (*not* NCS averaging)
Phil Jeffrey
- [phenixbb] Need help in refining my twinned P6322(apparent) dataset
Phil Jeffrey
- [phenixbb] Need help in refining my twinned P6322(apparent) dataset
Phil Jeffrey
- [phenixbb] rotamers
Phil Jeffrey
- [phenixbb] how convert mtz in xplor format
Phil Jeffrey
- [phenixbb] Multiprocessors/parallel runs keywords
Jendrek
- [phenixbb] Several problems with sugar refinement
Joe Krahn
- [phenixbb] Question about Adding Hydrogens
Louis Lazar
- [phenixbb] free R test or work set flag value
Bryan Lepore
- [phenixbb] free R test or work set flag value
Bryan Lepore
- [phenixbb] Bulk solvent correction
Ina Lindemann
- [phenixbb] Same enzyme, different space groups ?
Patrick Loll
- [phenixbb] phenix.maps2mtz
Yarrow Madrona
- [phenixbb] Only one solution in AutoMR with very negative LLG
Daniel Mattle
- [phenixbb] Glycan Links/Restraints
Nigel Moriarty
- [phenixbb] Elbow problem
Nigel Moriarty
- [phenixbb] XYZ refinement vs individual sites refinement
Kendall Nettles
- [phenixbb] reference model
Kendall Nettles
- [phenixbb] differences between command line and GUI?
Kendall Nettles
- [phenixbb] rotamers
Kendall Nettles
- [phenixbb] Elbow problem
Jerome Nwachukwu
- [phenixbb] rotamers
Antony Oliver
- [phenixbb] rotamers
Antony Oliver
- [phenixbb] Need help in refining my twinned P6322(apparent) dataset
John Pak
- [phenixbb] weird B factor refinement
Sebastiano Pasqualato
- [phenixbb] phenix migration
Sebastiano Pasqualato
- [phenixbb] ambiguous ligand density
Pompeu,Yuri Alexey Andreiw
- [phenixbb] ambiguous ligand density
Pompeu,Yuri Alexey Andreiw
- [phenixbb] ambiguous ligand density
Pompeu,Yuri Alexey Andreiw
- [phenixbb] ambiguous ligand density
Ed Pozharski
- [phenixbb] ambiguous ligand density
Ed Pozharski
- [phenixbb] B-factor discrepancy
Ed Pozharski
- [phenixbb] Only one solution in AutoMR with very negative LLG
Ed Pozharski
- [phenixbb] Only one solution in AutoMR with very negative LLG
Ed Pozharski
- [phenixbb] Need help in refining my twinned P6322(apparent) dataset
Ed Pozharski
- [phenixbb] Only one solution in AutoMR with very negative LLG
Ed Pozharski
- [phenixbb] Only one solution in AutoMR with very negative LLG
Ed Pozharski
- [phenixbb] Only one solution in AutoMR with very negative LLG
Ed Pozharski
- [phenixbb] Only one solution in AutoMR with very negative LLG
Ed Pozharski
- [phenixbb] Low rmsd values
Ed Pozharski
- [phenixbb] rotamers
Ed Pozharski
- [phenixbb] pdb editor after autobuild
Ed Pozharski
- [phenixbb] pdb editor after autobuild
Ed Pozharski
- [phenixbb] rotamers
Ed Pozharski
- [phenixbb] rotamers
Ed Pozharski
- [phenixbb] rotamers
Ed Pozharski
- [phenixbb] rotamers
Ed Pozharski
- [phenixbb] rotamers
Ed Pozharski
- [phenixbb] rotamers
Ed Pozharski
- [phenixbb] what to do with disordered side chains
Ed Pozharski
- [phenixbb] free R test or work set flag value
Andrew Purkiss-Trew
- [phenixbb] changing the project directory
Rajagopalan, Senapathy
- [phenixbb] Implementation of French & Wilson data correction?
Randy Read
- [phenixbb] anomalous difference map
Randy J. Read
- [phenixbb] automr renumbered all residues to 0 for final solution in dev-674
Francis E Reyes
- [phenixbb] Only one solution in AutoMR with very negative LLG
Francis E Reyes
- [phenixbb] Need help in refining my twinned P6322(apparent) dataset
Francis E Reyes
- [phenixbb] Only one solution in AutoMR with very negative LLG
Francis E Reyes
- [phenixbb] Only one solution in AutoMR with very negative LLG
Francis E Reyes
- [phenixbb] Only one solution in AutoMR with very negative LLG
Francis E Reyes
- [phenixbb] Multiprocessors/parallel runs keywords
Francis E Reyes
- [phenixbb] "FOM" or HL coeffs from model?
Phoebe Rice
- [phenixbb] rotamers
Phoebe Rice
- [phenixbb] rotamers
Sampson, Jared
- [phenixbb] Jan 15, 2011 deadline- User proposal submission for Collaborative Crystallography at BCSB
Banumathi Sankaran
- [phenixbb] Mar 15, 2011 deadline- User proposal submission for Collaborative Crystallography at BCSB
Banumathi Sankaran
- [phenixbb] Autobuild parent process aborted
Mark A Saper
- [phenixbb] Important change in phenix.refine output: MTZ file with data and map coefficients
Schubert, Carsten [PRDUS]
- [phenixbb] most appropriate map for ligand fitting/interaction withFMN
Schubert, Carsten [PRDUS]
- [phenixbb] Binary Installation failure on Ubuntu
Katherine Sippel
- [phenixbb] Binary Installation failure on Ubuntu
Katherine Sippel
- [phenixbb] Split Occupancy of a ligand and water
Katherine Sippel
- [phenixbb] Autobuild parent process aborted--running combine_models in Autobuild
Thomas C. Terwilliger
- [phenixbb] pdb editor after autobuild
Thomas C. Terwilliger
- [phenixbb] differences between command line and GUI?
Thomas C. Terwilliger
- [phenixbb] omit map
Thomas C. Terwilliger
- [phenixbb] ICSG 2011 early registration and abstracts submission open until March 4
Tom Terwilliger
- [phenixbb] Average maps (*not* NCS averaging)
Tom Terwilliger
- [phenixbb] anomalous difference map
Kris Tesh
- [phenixbb] rotamers
Dale Tronrud
- [phenixbb] rotamers
Dale Tronrud
- [phenixbb] phenix migration
Xtal_bb
- [phenixbb] Implementation of French & Wilson data correction?
Keitaro Yamashita
- [phenixbb] number of cycles
Keitaro Yamashita
- [phenixbb] r_free_flags.export_for_ccp4 option of iotbx.reflection_file_editor
Keitaro Yamashita
- [phenixbb] r_free_flags.export_for_ccp4 option of iotbx.reflection_file_editor
Keitaro Yamashita
- [phenixbb] what to do with disordered side chains
Huanwang Yang
- [phenixbb] most appropriate map for ligand fitting/interaction with FMN
Yuri
- [phenixbb] XYZ refinement vs individual sites refinement
Yuri
- [phenixbb] Fwd: XYZ refinement vs individual sites refinement
Yuri
- [phenixbb] B-factor discrepancy
Yuri
- [phenixbb] Refinement Strategy vs. R gap
Yuri
- [phenixbb] Refinement Strategy vs. R gap
Yuri
- [phenixbb] Refinement Strategy vs. R gap
Yuri
- [phenixbb] B factor statistics
Yuri
- [phenixbb] Same enzyme, different space groups ?
Yuri
- [phenixbb] Same enzyme, different space groups ?
Yuri
- [phenixbb] B-factors vs resolution
Yuri
- [phenixbb] error in the newer version of phenix
Peter Zwart
- [phenixbb] Same enzyme, different space groups ?
Peter Zwart
- [phenixbb] Same enzyme, different space groups ?
Peter Zwart
- [phenixbb] how convert mtz in xplor format
Peter Zwart
- [phenixbb] omit map
intekhab alam
- [phenixbb] omit map
intekhab alam
- [phenixbb] Low rmsd values
thaikara at btk.fi
- [phenixbb] modified nucleotide not linked
tuske at cabm.rutgers.edu
- [phenixbb] refinement for ligands with alternative conformation
zhengyi at msu.edu
- [phenixbb] how convert mtz in xplor format
fulvio saccoccia
- [phenixbb] modelvsdata output ksol and bsol are 0
zhangh1 at umbc.edu
- [phenixbb] modelvsdata output ksol and bsol are 0
zhangh1 at umbc.edu
- [phenixbb] ligand problem in phenix.refine
zhangh1 at umbc.edu
- [phenixbb] ligand problem in phenix.refine
zhangh1 at umbc.edu
- [phenixbb] whether phenix.refine can do Boverall refinement
zhangh1 at umbc.edu
- [phenixbb] Only one solution in AutoMR with very negative LLG
Zhang yu
- [phenixbb] Only one solution in AutoMR with very negative LLG
Zhang yu
- [phenixbb] Only one solution in AutoMR with very negative LLG
Zhang yu
- [phenixbb] Only one solution in AutoMR with very negative LLG
Zhang yu
- [phenixbb] Only one solution in AutoMR with very negative LLG
Zhang yu
- [phenixbb] Only one solution in AutoMR with very negative LLG
Zhang yu
- [phenixbb] The individual site refinement for Low resolution data (~3.8A)
Zhang yu
- [phenixbb] The individual site refinement for Low resolution data (~3.8A)
Zhang yu
- [phenixbb] Target weight optimization (wxu_scale and wxu)
Zhang yu
- [phenixbb] Target weight optimization (wxu_scale and wxu)
Zhang yu
- [phenixbb] Glycan Links/Restraints
Engin Özkan
- [phenixbb] rotamers
Engin Özkan
Last message date:
Thu Mar 31 19:05:56 PDT 2011
Archived on: Thu Mar 31 19:06:00 PDT 2011
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