[phenixbb] phenix.mr_rosetta error

[Jermaine Jenkins]

Hi,
I am trying to use phenix.mr_rosetta supplying a local.hhr file and using
only the top alignment which is an NMR structure and the pre_refine option.
It finishes the mr.model_preparation and writes out two pdbs  ( _sculpt and
_chain that each have 10 ensembles) but then writes out a empty
alignment.ali file (should be 100% identity between the template and the
search model). Below is the error I get in the RUN_1.log file.

Wrote dummy alignment to
/pre_refine/MR_ROSETTA_1/GROUP_OF_PLACE_MODEL_1/RUN_1/alignment.ali

******************* ERROR ENDING ***************

Sorry, the alignment file
['/pre_refine/MR_ROSETTA_1/GROUP_OF_PLACE_MODEL_1/RUN_1/alignment.ali']
does not have enough lines (6 required, 0 found):


Note: last line needs to be '--'


******************* ERROR ENDING ***************

Sorry, the alignment file
['../pre_refine/MR_ROSETTA_1/GROUP_OF_PLACE_MODEL_1/RUN_1/alignment.ali']
does not have enough lines (6 required, 0 found):

Note: last line needs to be '--'

Thanks,
JJ
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