[phenixbb] PHENIX atom selection language

[Jianghai Zhu]

Cool. Thanks, Pavel.  It would be nice to have a list of all selection keywords and corresponding definitions somewhere.  

-- Jianghai




On Oct 6, 2011, at 6:16 PM, Pavel Afonine wrote:

> Example:
> 
> sel = chaina A and resseq 123 and resname LIG and altloc A
> 
> "resseq 123" and "resname LIG" are probably redundant, so you can just do
> 
> sel = chaina A and resseq 123 and altloc A
> 
> Another example:
> 
> sel = chaina A and resseq 123 and name C1 and altloc A
> 
> Pavel
> 
> On 10/6/11 3:12 PM, Jianghai Zhu wrote:
>> I have a fragment with two conformations.  I want to select one of the conformations of this fragment.
>> 
>> -- Jianghai
>> 
>> 
>> 
>> 
>> On Oct 6, 2011, at 6:11 PM, Pavel Afonine wrote:
>> 
>>> Hi Jianghai,
>>> 
>>> there is no dedicated documentation. Most of what one can need is in phenix.refine documentation (and this is probably I know without looking at the source code). What exactly you need it for?
>>> 
>>> Pavel
>>> 
>>> 
>>> On 10/6/11 3:06 PM, Jianghai Zhu wrote:
>>>> Hi,
>>>> 
>>>> Where can I find a complete description of PHENIX atom selection language?  The examples in the PHENIX.REFINE manual are not enough.  Thanks.
>>>> 
>>>> -- Jianghai
>>>> 
>>>> 
>>>> 
>>>> 
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