No subject

Wed Oct 12 06:04:04 PDT 2011

% python scons.py -j2 bin mode=3Drelease

The compilation runs for a while but finally I got the termination message =
below.

What should I try next?

Best regards,
Martin

#################### my computer info ##################

daffy-mochma 183% scons --version
SCons by Steven Knight et al.:
    script: v1.0.0.d20080826.r3315, 2008/08/26 11:30:08, by scons on scons-=
dev
    engine: v1.0.0.d20080826.r3315, 2008/08/26 11:30:08, by scons on scons-=
dev
Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 The SCons Foun=
dation

daffy-mochma 104% uname -a
Linux daffy 2.6.27.41-170.2.117.fc10.i686 #1 SMP Thu Dec 10 11:00:29 EST 20=
09 i686 i686 i386 GNU/Linux

daffy-mochma 105% python --version
Python 2.5.2

############# termination message #############################

g++ -o build/src/release/linux/2.6/32/x86/gcc/libutility.so -Wl,-rpath=3D/n=
et/fileserver/xtal/rosetta3.3_bundles/rosetta_source/build/external/release=
/linux/2.6/32/x86/gcc/ -shared build/src/release/linux/2.6/32/x86/gcc/utili=
ty/pointer/ReferenceCount.os build/src/release/linux/2.6/32/x86/gcc/utility=
/pointer/ReferenceCountMI_.os build/src/release/linux/2.6/32/x86/gcc/utilit=
y/options/OptionCollection.os build/src/release/linux/2.6/32/x86/gcc/utilit=
y/options/mpi_stderr.os build/src/release/linux/2.6/32/x86/gcc/utility/tag/=
Tag.os build/src/release/linux/2.6/32/x86/gcc/utility/sql_database/Database=
SessionManager.os build/src/release/linux/2.6/32/x86/gcc/utility/boinc/boin=
c_util.os build/src/release/linux/2.6/32/x86/gcc/utility/io/icstream.os bui=
ld/src/release/linux/2.6/32/x86/gcc/utility/io/izstream.os build/src/releas=
e/linux/2.6/32/x86/gcc/utility/io/ocstream.os build/src/release/linux/2.6/3=
2/x86/gcc/utility/io/ozstream.os build/src/release/linux/2.6/32/x86/gcc/uti=
lity/options/keys/OptionKeys.os build/src/release/linux/2.6/32/x86/gcc/util=
ity/excn/Exceptions.os build/src/release/linux/2.6/32/x86/gcc/utility/file/=
file_sys_util.os build/src/release/linux/2.6/32/x86/gcc/utility/file/FileNa=
me.os build/src/release/linux/2.6/32/x86/gcc/utility/file/gzip_util.os buil=
d/src/release/linux/2.6/32/x86/gcc/utility/file/PathName.os build/src/relea=
se/linux/2.6/32/x86/gcc/utility/basic_sys_util.os build/src/release/linux/2=
.6/32/x86/gcc/utility/string_util.os build/src/release/linux/2.6/32/x86/gcc=
/utility/heap.os build/src/release/linux/2.6/32/x86/gcc/utility/integer_map=
ping.os build/src/release/linux/2.6/32/x86/gcc/utility/mpi_util.os build/sr=
c/release/linux/2.6/32/x86/gcc/utility/exit.os build/src/release/linux/2.6/=
32/x86/gcc/utility/LexicographicalIterator.os -Llib -Lexternal/lib -Lbuild/=
src/release/linux/2.6/32/x86/gcc -Lsrc -Lbuild/external/release/linux/2.6/3=
2/x86/gcc -Lexternal -L/usr/local/lib -L/usr/lib -lObjexxFCL -lz -lcppdb -l=
sqlite3
/usr/bin/ld: cannot find -lz
collect2: ld returned 1 exit status
scons: *** [build/src/release/linux/2.6/32/x86/gcc/libutility.so] Error 1
scons: building terminated because of errors.

Martin Moche, Ph.D.
Head of Protein Crystallography
Karolinska Institutet
MBB/PSF
Scheeles v=E4g 2
171 77 Stockholm
Sweden
phone:   +46-8-524 868 43
mobile: +46-73-322 93 27
fax:     +46-8-524 868 68
email:  Martin.Moche at ki.se

--_000_89C1AFE887F25C488684E6F3CDF41B733DDAB009KIMSX04userkise_
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<div style=3D"direction: ltr;font-family: Tahoma;color: #000000;font-size: =
10pt;">Dear Phenix Users,<br>
<br>
I am trying to compile rosetta mr on my fedora 10 computer:<br>
http://www.phenix-online.org/documentation/mr_rosetta.htm#anch35<br>
<br>
Compared to the instructions <br>
% tar xzf rosetta3.2_Bundles.tgz<br>
<br>
did not work for me, instead I run<br>
% tar xvf rosetta3.2_Bundles.tgz<br>
<br>
and subsequently <br>
% tar xvf BioTools-3.3.tgz<br>
% tar xvf protocol_capture-3.3.tgz <br>
etc etc<br>
<br>