[phenixbb] Error of Sculptor

[Zhang yu]

Dear Gabor,

The error message shows nothing but part of the alignment file. I tried
both Phenix 1.7.3 and 1.7.1.

Thanks,
Fish

2012/4/25 Gabor Bunkoczi <gb360 at cam.ac.uk>

> Dear Fish,
>
> can you let me know what the error message is and which Phenix version are
> you using? Your alignment file looks OK to me.
>
> Thanks, Gabor
>
>
>
> On Apr 25 2012, Zhang yu wrote:
>
>  Dear Phenixer,
>>
>> When I used Sculptor to generate a new model, there is a error which I
>> can not figure out. I input a PDB file (*.pdb) and an alignment file
>> (*.aln).
>>
>> The following is the log file (contents in ######). There seems
>> something wrong with the *.aln file.
>> #################
>> Reading PDB file
>> ----------------
>>
>> File name: **/**/******/******/**.pdb
>> Separating solvent from macromolecules...
>>
>> Reading alignment files
>> -----------------------
>>
>> 1. **/**/**.aln
>>
>> #####################
>>
>>
>>
>>
>> The following is the content of the alignment file:
>>
>> **_**      MVYSYTEKKRIRKDFGKRPQVLDVPYLLSI**QLDSFQKFIEQDPEGQY----GLEAAFRSV
>> **_**      ---------**MEIKRFGRIREVIPLPPLTEIQVESYRRAL**
>> QADVPPEKRENVGIQAAFRET
>>                           * **: :*: :* * .**::*::: :: * : *::****..
>>
>> What is the problem with the alignment file?
>>
>> Thank you in advance!
>> Fish
>>
>>
> --
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>
>    Dr Gabor Bunkoczi
>
>    Cambridge Institute for Medical Research
>    Wellcome Trust/MRC Building
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