[phenixbb] Ordered solvent distances

Abhinav Kumar abhinavk at slac.stanford.edu
Wed Aug 1 12:37:46 PDT 2012


Hi,

The default minimum distance that a water gets placed near protein/water 
atoms using 'ordered_solvent=true' option in phenix.refine is 1.8.
Isn't this too close?

Also, if two waters can't get placed in the density due to distance 
criterion, can phenix place one water in dual conformations in that density?

-- 
Thanks,
Abhinav

JCSG at SSRL, SLAC
(650) 926-2992

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