[phenixbb] CCI-Apps - Cygwin incompatibility after upgrade

[Schubert, Carsten [JRDUS]]

Hi Ralf, 

 

Thanks for the hint. I got it to work with 'cmd /c phenix.refine' from
the cygwin prompt. Was loathe to change all the .bat files as suggested
in the thread, but it pointed me to the solution. Is there an
overwhelming reason why .bat files are used as opposed to the old style
mini .exe files? Would be really nice to have the old style back or at
least the option to recreate them as a post processing step. 

 

Carsten

 

From: phenixbb-bounces at phenix-online.org
[mailto:phenixbb-bounces at phenix-online.org] On Behalf Of Ralf
Grosse-Kunstleve
Sent: Wednesday, January 04, 2012 11:10 PM
To: PHENIX user mailing list
Subject: Re: [phenixbb] CCI-Apps - Cygwin incompatibility after upgrade

 

Hi Carsten,

 

Could you try this?

 

http://cygwin.com/ml/cygwin/2001-01/msg00724.html

 

Ralf

On Wed, Jan 4, 2012 at 6:28 PM, Schubert, Carsten [JRDUS]
<CSCHUBER at its.jnj.com> wrote:

Hi,

After upgrading my cci_apps install on Windows from 1.7-718 to 1.7.3-928
the interoperability with cygwin is gone. Calling phenix.refine just
gives a 'Command not found' error. Turns out that the little .exe files
for each subprogram were replaced by .bat files. That is fine if one
just wants to use the DOS CLI, but cygwin is not able to call programs
via .bat files as far as I know. 

Is there a workaround for this problem besides working in the DOS CLI
(yuk)?

Thanks 

Carsten


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