[phenixbb] I/O error in writing very large B-factors

Nathaniel Echols nechols at lbl.gov
Mon Jul 9 13:04:39 PDT 2012


On Mon, Jul 9, 2012 at 12:59 PM, Phil Jeffrey <pjeffrey at princeton.edu> wrote:
> This occurs at the end of refinement.  Quite why it's trying to *read* from
> a string with Fortran-esque overflow formatting while in a writing step I
> don't know, but the PDB file gets truncated at
> REMARK IF THIS FILE IS FOR PDB DEPOSITION: REMOVE ALL FROM THIS LINE UP.
>
> The structure is not idyllic, clearly, but I'd like to see the extent of the
> problem rather than just the first atom.  Got to be pretty easy to trap for
> and map to 999.99 either on the way in or out.

Pavel made this change several months ago - you need to update to version 1.8.

-Nat


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